ID Q2QVZ5_ORYSJ Unreviewed; 1234 AA.
AC Q2QVZ5;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2006, sequence version 1.
DT 27-MAR-2024, entry version 91.
DE RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
GN OrderedLocusNames=LOC_Os12g11110 {ECO:0000313|EMBL:ABA96740.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA96740.1};
RN [1] {ECO:0000313|EMBL:ABA96740.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA96740.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA96740.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000011; ABA96740.1; -; Genomic_DNA.
DR AlphaFoldDB; Q2QVZ5; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd00024; CD_CSD; 1.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45835:SF87; RNA-DIRECTED DNA POLYMERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 237..252
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 865..1028
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 165..230
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1205..1234
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..229
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1234 AA; 141814 MW; BBC830EC9666FEDB CRC64;
MVNTRSNGNG PNNPNNNNNG ENPTLAQVLA QQTQLMNMMM QQLQNQQNQG NNHAPPQNKL
AEFLRLHGPA SEWWDHFRLN RTTAEPITWL EFTAAFRKTH IPSGVVSLKK KEFRSLTQGS
RSVTEYLHEF NRLARYAPED KLVDKAIRQE DKYNRMEQKK RRIAQFKTQQ GNNQKPRLTL
GPQTMPHGGS SSVVRPQRQF FNNNAGNNNR NQAPRPVAAP TQQQPAKREQ GSKPVVCFNC
GDPGHYADKC PKPRRVKVVP AQSNSTVPAS KARVNHVAAA EAQDAPDVIL GTFLVNLVPA
AVLFDSGATH SFLSMSFAGN HGMEVEDLRR PLMVSTPSNQ ALSLQRSPSV RIEIKGVLFL
ANLILLESKD LDVILGMDWL ARHKGVIDCA NRKVTLTSHD GRVVIVHALS SESLRSRLNQ
ITLEEIPIVR EYPDVFPDDL PGMPPKRDIE FGIDLVPGTT PIHKRPYRMA ANELAEVKRQ
VDDLLQKGNI RPSSSPWGAP VIFGGKERSY PEDLKGATVF SKIDLRSGYH QLRIKEEDIP
KTAFTTRYGL FECTVMSFGL TNAPAFFMNL MNKVFMEYLD KFVVVFIDDI LIYSRTKEEH
EEHLRLALEK LREHQLYAKF SKCEFWLSEV KFLGHKQPKT VSEICSFLGL AGYYRRFIEN
FSKIAKPMTR LLQKDVKYKW SEECEQSFQE LKNRLISAPI LILPDPKKGF QDGKVVAYAS
RQLRPHEKNY PTHDLELAAV VHALKIWRHY LFGTRTEVYT DHKSLKYIFT QPDLNMRQRR
WLELIKDYDM GICVPDNKDL KDAILKEAHD TLYSIHPGST KMYQDLKERF WWASMKREIA
EYVAVCDVCQ RVKAEHQKPA GLLQPLKIPE WKWEEIGMDF ITGLPRTSSG HDSIWVIVDR
LTKVAHFIPV KTTYSGSRLA ELYMARIVCL HGVPKKIVSD RGSQFTSNFW KKLQEEMGSK
LNFSTAYHPQ TDGQTERVNQ ILEDMLRACA LDFGGSWDKN LPYAEFSYNN SYQASLQMAP
YEALYGRKCR TPLLWDRTGE RQVFGTDILR EAEEKVKIIQ ERLRVAQSHY KSYADNRRRD
LSFEEGDYVY LRVTPLRGVH RFHTKGKLAP RFVGPYMIVS RRGEVAYQLE LPQSLAGVHN
VFHVSQLKKC LRVPTEEANL EQIEVQEDLT YVEKPIRILE TNERRTRNRV IRFCKVQWSN
HSEEESTWER EDELKSAHPH LFASSSESRG RDSV
//
