ID Q2R2G1_ORYSJ Unreviewed; 1700 AA.
AC Q2R2G1;
DT 24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 24-JAN-2006, sequence version 1.
DT 24-JAN-2024, entry version 77.
DE SubName: Full=Retrotransposon protein, putative, unclassified {ECO:0000313|EMBL:ABA94385.1};
GN OrderedLocusNames=LOC_Os11g35920 {ECO:0000313|EMBL:ABA94385.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA94385.1};
RN [1] {ECO:0000313|EMBL:ABA94385.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA94385.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA94385.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000010; ABA94385.1; -; Genomic_DNA.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR24559:SF425; RT_RNASEH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 1595..1700
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 114..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 173..217
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 305..327
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 182..199
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1700 AA; 193478 MW; 996770212F546543 CRC64;
MAGGGREENL SWEVFRRVVS YIVQRNHKYV LHIASLRARV GHNYLTEGGK DPPFILRSSC
FQDQINWHAH EPQRQDFWTC TGVKQISQAS CFSHQHAFGK PSGTKLRQFS LMAEKPPQSP
SSATKTVVPP QTKIPKPTGT NEAENAQQQF MNSFTETRQG RVVQKYKLKL VADVPGTGPS
KDGEVQKTQV STDDSGSKGT TDGLGDKGDG LQDGLVEDLG EDSNREQLQF NNFQDWIDYT
VQHALINQSG VLVNTLTNMV KFLVDGTIAK HQATGPVYLP GGVFPNYRYL ITGNQQPATN
ITPVQPTAPV SAPAPAAPSS APRQTTNPRL LTREQPQHVG QNINRLTQEQ VAAMFLPNPL
VANPAQSMPI QQTPPRQQTD QSVLPQVIPE HLVHNIQPNF QNYYGGNLSY QYQPPLPHVQ
YQQRGSPQPQ FAPQFNQFEP IPQQMQGVPQ QRPWADMIAD VMRKQFGLKP KDYGNLYQHP
YPEWFERLAD LAFQGLIAPI KEKFSSQEFE SLSHLAQKVT LHEQRFAEAK KNFKKINHVY
PYMYDFDEEN DSEVAAAEWV RSKKVVPCQW VRSSGKEERI DFDITKADKI FDLLLREKQI
QLPDGHIIPS TEELGERRYC KWHNSGSHST NDCKVFRQQI QVAIEGGKIK FDDSKKPMKV
DGNPFSVNME RYYEEDDGGF DPHWDCEFFR FCWNEGMRLP SIENCPGCSD TAGSSSRSCN
RGNRLIQKRI PVHQRLGHVN QDYHHDEDED RKTQWCPTGI FTKNQKRMVQ RIRNMERFQE
VEQEINHRLR KTKTKQAIFE KPEGTKNRHL KPLYINRFVN GKPMSKMMVD GGAAVNLMPY
ATFRKLGRSA DDLIKMNMVL KDFGGNPSET KGVLNVELTV GNKIVPTTFF VIDGKGSYSL
LLGRDWIHAN CCIPSTMHQC LIKWQGDKIE IVLADSQLKM ESPNYYFEGV VEGSNVYTKD
TVDDLDDKQG KGFMSADDLE EIDIGLGDRP RPTFIIPVIK KNGKVRVCID FQDLNKATPK
DEYPMPVADQ LVDAASGYKI LSFMNGNAGY NQIFMAEEDI HKTAFRCPGA IGLFEWVVMT
FGLKSTGATY QRAMNYIFHD LIGWLVEVYI DDVVVKSKEV ENHIVDLRKV FERTRKYGLK
MNPTKCAFGV SVGQFLGFLV HERGIEVTQR SINAIKKIHP PEDKKKLQEL IGKINFVRRF
ISNLSGRLEP FTPLLRLKAD QEFTWGAEQQ RALDNIKEYL SSPPVLIPPQ KGIPFRLYLS
AGEKSIGSVL IQELEGKERA VFYLSRRLLD AETRHYLLSN ECTVICKADV VKYMLSAPIL
KGRVRKWIFA LTEFDLRYES PKAIKGIGLV IISPRGASFE FAYTIKPYAT NNQAEYQAVL
KGLQLLKEVE ADAIEIMGDS LLVISQLARE YECKNDTLMV YNEKCRELMD GFWLVTLKHV
SREQNVEAND LAQGASGYKP MMRDIKIEVA TISADDWRYD VYQYLQNSSQ SASQKLRYKA
LKYTLLDDEL YYRTIDGVLL KCLSTDKAKV AIGEVHEGIC GTHQSAHKMK WLLRHAGYFW
PTIFEDCFRY YKGCQDCQKF GAIQRAPASA MNPIIKPWPF RGWGMDMIGQ INPSSSKRHK
FILVATDYFT KWVEAIPLKK VDSGDAIQFV QEHIIYRFGI LQTITTDQGS IFVSDEFVQF
ADSMGIKLLN SSPYYVQANG
//