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Database: UniProt
Entry: Q2R2G1_ORYSJ
LinkDB: Q2R2G1_ORYSJ
Original site: Q2R2G1_ORYSJ 
ID   Q2R2G1_ORYSJ            Unreviewed;      1700 AA.
AC   Q2R2G1;
DT   24-JAN-2006, integrated into UniProtKB/TrEMBL.
DT   24-JAN-2006, sequence version 1.
DT   24-JAN-2024, entry version 77.
DE   SubName: Full=Retrotransposon protein, putative, unclassified {ECO:0000313|EMBL:ABA94385.1};
GN   OrderedLocusNames=LOC_Os11g35920 {ECO:0000313|EMBL:ABA94385.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA94385.1};
RN   [1] {ECO:0000313|EMBL:ABA94385.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2] {ECO:0000313|EMBL:ABA94385.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:ABA94385.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; DP000010; ABA94385.1; -; Genomic_DNA.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   CDD; cd00303; retropepsin_like; 1.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 2.40.70.10; Acid Proteases; 1.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR24559:SF425; RT_RNASEH DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF50630; Acid proteases; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT   DOMAIN          1595..1700
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          114..143
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          173..217
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          305..327
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        182..199
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1700 AA;  193478 MW;  996770212F546543 CRC64;
     MAGGGREENL SWEVFRRVVS YIVQRNHKYV LHIASLRARV GHNYLTEGGK DPPFILRSSC
     FQDQINWHAH EPQRQDFWTC TGVKQISQAS CFSHQHAFGK PSGTKLRQFS LMAEKPPQSP
     SSATKTVVPP QTKIPKPTGT NEAENAQQQF MNSFTETRQG RVVQKYKLKL VADVPGTGPS
     KDGEVQKTQV STDDSGSKGT TDGLGDKGDG LQDGLVEDLG EDSNREQLQF NNFQDWIDYT
     VQHALINQSG VLVNTLTNMV KFLVDGTIAK HQATGPVYLP GGVFPNYRYL ITGNQQPATN
     ITPVQPTAPV SAPAPAAPSS APRQTTNPRL LTREQPQHVG QNINRLTQEQ VAAMFLPNPL
     VANPAQSMPI QQTPPRQQTD QSVLPQVIPE HLVHNIQPNF QNYYGGNLSY QYQPPLPHVQ
     YQQRGSPQPQ FAPQFNQFEP IPQQMQGVPQ QRPWADMIAD VMRKQFGLKP KDYGNLYQHP
     YPEWFERLAD LAFQGLIAPI KEKFSSQEFE SLSHLAQKVT LHEQRFAEAK KNFKKINHVY
     PYMYDFDEEN DSEVAAAEWV RSKKVVPCQW VRSSGKEERI DFDITKADKI FDLLLREKQI
     QLPDGHIIPS TEELGERRYC KWHNSGSHST NDCKVFRQQI QVAIEGGKIK FDDSKKPMKV
     DGNPFSVNME RYYEEDDGGF DPHWDCEFFR FCWNEGMRLP SIENCPGCSD TAGSSSRSCN
     RGNRLIQKRI PVHQRLGHVN QDYHHDEDED RKTQWCPTGI FTKNQKRMVQ RIRNMERFQE
     VEQEINHRLR KTKTKQAIFE KPEGTKNRHL KPLYINRFVN GKPMSKMMVD GGAAVNLMPY
     ATFRKLGRSA DDLIKMNMVL KDFGGNPSET KGVLNVELTV GNKIVPTTFF VIDGKGSYSL
     LLGRDWIHAN CCIPSTMHQC LIKWQGDKIE IVLADSQLKM ESPNYYFEGV VEGSNVYTKD
     TVDDLDDKQG KGFMSADDLE EIDIGLGDRP RPTFIIPVIK KNGKVRVCID FQDLNKATPK
     DEYPMPVADQ LVDAASGYKI LSFMNGNAGY NQIFMAEEDI HKTAFRCPGA IGLFEWVVMT
     FGLKSTGATY QRAMNYIFHD LIGWLVEVYI DDVVVKSKEV ENHIVDLRKV FERTRKYGLK
     MNPTKCAFGV SVGQFLGFLV HERGIEVTQR SINAIKKIHP PEDKKKLQEL IGKINFVRRF
     ISNLSGRLEP FTPLLRLKAD QEFTWGAEQQ RALDNIKEYL SSPPVLIPPQ KGIPFRLYLS
     AGEKSIGSVL IQELEGKERA VFYLSRRLLD AETRHYLLSN ECTVICKADV VKYMLSAPIL
     KGRVRKWIFA LTEFDLRYES PKAIKGIGLV IISPRGASFE FAYTIKPYAT NNQAEYQAVL
     KGLQLLKEVE ADAIEIMGDS LLVISQLARE YECKNDTLMV YNEKCRELMD GFWLVTLKHV
     SREQNVEAND LAQGASGYKP MMRDIKIEVA TISADDWRYD VYQYLQNSSQ SASQKLRYKA
     LKYTLLDDEL YYRTIDGVLL KCLSTDKAKV AIGEVHEGIC GTHQSAHKMK WLLRHAGYFW
     PTIFEDCFRY YKGCQDCQKF GAIQRAPASA MNPIIKPWPF RGWGMDMIGQ INPSSSKRHK
     FILVATDYFT KWVEAIPLKK VDSGDAIQFV QEHIIYRFGI LQTITTDQGS IFVSDEFVQF
     ADSMGIKLLN SSPYYVQANG
//
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