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Database: UniProt
Entry: Q2WGN6_TOBAC
LinkDB: Q2WGN6_TOBAC
Original site: Q2WGN6_TOBAC 
ID   Q2WGN6_TOBAC            Unreviewed;       752 AA.
AC   Q2WGN6;
DT   10-JAN-2006, integrated into UniProtKB/TrEMBL.
DT   10-JAN-2006, sequence version 1.
DT   24-JAN-2024, entry version 85.
DE   RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE            EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN   Name=NtGPDL {ECO:0000313|EMBL:BAE53680.1};
GN   Synonyms=LOC107795798 {ECO:0000313|RefSeq:XP_016473975.1};
OS   Nicotiana tabacum (Common tobacco).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC   Nicotiana.
OX   NCBI_TaxID=4097 {ECO:0000313|EMBL:BAE53680.1};
RN   [1] {ECO:0000313|EMBL:BAE53680.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Choi C-S., Wada Y., Miyamoto K., Kusano T., Sano H.;
RT   "Environmental stimuli simultaneously induce demethylation and
RT   transcriptional activation of stress-responsive genes in tobacco plants.";
RL   Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:BAF34116.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wada Y., Miyamoto K., Kusano T., Sano H.;
RT   "Association between up-regulation of stress-responsive genes and
RT   hypomethylation of genomic DNA in tobacco plants.";
RL   Mol. Gen. Genet. 271:658-666(2004).
RN   [3] {ECO:0000313|EMBL:BAE53680.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=15148604; DOI=10.1007/s00438-004-1018-4;
RA   Wada Y., Miyamoto K., Kusano T., Sano H.;
RT   "Association between up-regulation of stress-responsive genes and
RT   hypomethylation of genomic DNA in tobacco plants.";
RL   Mol. Genet. Genomics 271:658-666(2004).
RN   [4] {ECO:0000313|EMBL:BAF34116.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=17273870; DOI=10.1007/s00438-007-0209-1;
RA   Choi C., Sano H.;
RT   "Abiotic-stress induces demethylation and transcriptional activation of a
RT   gene encoding a glycerophosphodiesterase-like protein in tobacco plants.";
RL   Mol. Genet. Genomics 277:589-600(2007).
RN   [5] {ECO:0000313|Proteomes:UP000084051}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TN90 {ECO:0000313|Proteomes:UP000084051};
RX   PubMed=24807620; DOI=10.1038/ncomms4833;
RA   Sierro N., Battey J.N., Ouadi S., Bakaher N., Bovet L., Willig A.,
RA   Goepfert S., Peitsch M.C., Ivanov N.V.;
RT   "The tobacco genome sequence and its comparison with those of tomato and
RT   potato.";
RL   Nat. Commun. 5:3833-3833(2014).
RN   [6] {ECO:0000313|RefSeq:XP_016473975.1}
RP   IDENTIFICATION.
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC         glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC         ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC         ChEBI:CHEBI:83408; EC=3.1.4.46;
CC         Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR   EMBL; AB120519; BAE53680.1; -; mRNA.
DR   EMBL; AB267678; BAF34116.1; -; Genomic_DNA.
DR   RefSeq; NP_001312539.1; NM_001325610.1.
DR   RefSeq; XP_016473975.1; XM_016618489.1.
DR   STRING; 4097.Q2WGN6; -.
DR   PaxDb; 4097-Q2WGN6; -.
DR   GeneID; 107795798; -.
DR   KEGG; nta:107795798; -.
DR   OMA; NDIAHDY; -.
DR   OrthoDB; 1200549at2759; -.
DR   Proteomes; UP000084051; Unplaced.
DR   GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IBA:GO_Central.
DR   GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR   GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR   CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR   CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR   Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR   InterPro; IPR030395; GP_PDE_dom.
DR   InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR   PANTHER; PTHR43620:SF32; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL1-RELATED; 1.
DR   PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR   Pfam; PF03009; GDPD; 2.
DR   SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR   PROSITE; PS51704; GP_PDE; 2.
PE   2: Evidence at transcript level;
KW   Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Reference proteome {ECO:0000313|Proteomes:UP000084051};
KW   Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT   SIGNAL          1..22
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           23..752
FT                   /note="glycerophosphodiester phosphodiesterase"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5015097357"
FT   DOMAIN          40..340
FT                   /note="GP-PDE"
FT                   /evidence="ECO:0000259|PROSITE:PS51704"
FT   DOMAIN          356..655
FT                   /note="GP-PDE"
FT                   /evidence="ECO:0000259|PROSITE:PS51704"
SQ   SEQUENCE   752 AA;  82005 MW;  1E8C2220C50DB0D2 CRC64;
     MWNLRSISCL LLLCCSAAFV SAQRSDNATS KWLTLTGDAP KVIARGGFSG LMPDSSFNAY
     ILAKAISVAD WVAWCDVQLT KDGVGICLSD IRLDNSSDVN VLFKNKQNTY LVNGVPQKGW
     FSVDFNFKDL ALVSLKQGVF SRSPRFDGTP QQILTVQDVA SQVKPPGLWL NIQHDSFYSQ
     RNLSIRSFVV SLSRSVIVNY ISSPEVNFLR SIARRFNPRV TKFVFRFLGE DGIEPSTNQT
     YGSLLKNLTF VKTFASGILV PKHYIWPVDN SLYLQPHTSV VLDAHKEGLE IFAADFANDV
     PSAYNYSYDP VAEYLSYIDN GDFSVDGVLS DFPLTPSSSV DCFSHLGKND KPQVKLQIIT
     SEGASGDYPG CTDLAYTKAA SDGADVLGCP VQMTKDRVPF CLGSINLIDK TTAAQSPFSN
     IATTVPELKI TNGILTINLT WTEIQSLKPA ISNRWSEFRL FRNPKARNDG NFMSLADFLT
     FAKNATSVSG VMISVENAAY MAKQGLGVTG AVLDALSKAG YNNQTAKKVL IQSTDSSVLE
     EFKKSSYELV YGVGDDIRDI ESSTILEIKT FAKSVIITKQ SVFPSEDAFI IAQTNVVQKL
     QSSNLTVYVQ LLNNEFVSQS WDFFSDSSVE LNNYAVGAGI DGVITEYPAT AARYRRNRCL
     GFKDSPPYMT SVQPGSLLEL MAPQFLPPAE APNPVLTESD VVEPPLPPVA KINPSNDNGS
     AIAPTPPNGQ SSVVASILMS SVAILLATIM VV
//
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