ID Q2WGN6_TOBAC Unreviewed; 752 AA.
AC Q2WGN6;
DT 10-JAN-2006, integrated into UniProtKB/TrEMBL.
DT 10-JAN-2006, sequence version 1.
DT 24-JAN-2024, entry version 85.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
GN Name=NtGPDL {ECO:0000313|EMBL:BAE53680.1};
GN Synonyms=LOC107795798 {ECO:0000313|RefSeq:XP_016473975.1};
OS Nicotiana tabacum (Common tobacco).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae;
OC Nicotiana.
OX NCBI_TaxID=4097 {ECO:0000313|EMBL:BAE53680.1};
RN [1] {ECO:0000313|EMBL:BAE53680.1}
RP NUCLEOTIDE SEQUENCE.
RA Choi C-S., Wada Y., Miyamoto K., Kusano T., Sano H.;
RT "Environmental stimuli simultaneously induce demethylation and
RT transcriptional activation of stress-responsive genes in tobacco plants.";
RL Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:BAF34116.1}
RP NUCLEOTIDE SEQUENCE.
RA Wada Y., Miyamoto K., Kusano T., Sano H.;
RT "Association between up-regulation of stress-responsive genes and
RT hypomethylation of genomic DNA in tobacco plants.";
RL Mol. Gen. Genet. 271:658-666(2004).
RN [3] {ECO:0000313|EMBL:BAE53680.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=15148604; DOI=10.1007/s00438-004-1018-4;
RA Wada Y., Miyamoto K., Kusano T., Sano H.;
RT "Association between up-regulation of stress-responsive genes and
RT hypomethylation of genomic DNA in tobacco plants.";
RL Mol. Genet. Genomics 271:658-666(2004).
RN [4] {ECO:0000313|EMBL:BAF34116.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=17273870; DOI=10.1007/s00438-007-0209-1;
RA Choi C., Sano H.;
RT "Abiotic-stress induces demethylation and transcriptional activation of a
RT gene encoding a glycerophosphodiesterase-like protein in tobacco plants.";
RL Mol. Genet. Genomics 277:589-600(2007).
RN [5] {ECO:0000313|Proteomes:UP000084051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TN90 {ECO:0000313|Proteomes:UP000084051};
RX PubMed=24807620; DOI=10.1038/ncomms4833;
RA Sierro N., Battey J.N., Ouadi S., Bakaher N., Bovet L., Willig A.,
RA Goepfert S., Peitsch M.C., Ivanov N.V.;
RT "The tobacco genome sequence and its comparison with those of tomato and
RT potato.";
RL Nat. Commun. 5:3833-3833(2014).
RN [6] {ECO:0000313|RefSeq:XP_016473975.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (SEP-2023) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR EMBL; AB120519; BAE53680.1; -; mRNA.
DR EMBL; AB267678; BAF34116.1; -; Genomic_DNA.
DR RefSeq; NP_001312539.1; NM_001325610.1.
DR RefSeq; XP_016473975.1; XM_016618489.1.
DR STRING; 4097.Q2WGN6; -.
DR PaxDb; 4097-Q2WGN6; -.
DR GeneID; 107795798; -.
DR KEGG; nta:107795798; -.
DR OMA; NDIAHDY; -.
DR OrthoDB; 1200549at2759; -.
DR Proteomes; UP000084051; Unplaced.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IBA:GO_Central.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR PANTHER; PTHR43620:SF32; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL1-RELATED; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 2.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR PROSITE; PS51704; GP_PDE; 2.
PE 2: Evidence at transcript level;
KW Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000084051};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..22
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 23..752
FT /note="glycerophosphodiester phosphodiesterase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5015097357"
FT DOMAIN 40..340
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 356..655
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
SQ SEQUENCE 752 AA; 82005 MW; 1E8C2220C50DB0D2 CRC64;
MWNLRSISCL LLLCCSAAFV SAQRSDNATS KWLTLTGDAP KVIARGGFSG LMPDSSFNAY
ILAKAISVAD WVAWCDVQLT KDGVGICLSD IRLDNSSDVN VLFKNKQNTY LVNGVPQKGW
FSVDFNFKDL ALVSLKQGVF SRSPRFDGTP QQILTVQDVA SQVKPPGLWL NIQHDSFYSQ
RNLSIRSFVV SLSRSVIVNY ISSPEVNFLR SIARRFNPRV TKFVFRFLGE DGIEPSTNQT
YGSLLKNLTF VKTFASGILV PKHYIWPVDN SLYLQPHTSV VLDAHKEGLE IFAADFANDV
PSAYNYSYDP VAEYLSYIDN GDFSVDGVLS DFPLTPSSSV DCFSHLGKND KPQVKLQIIT
SEGASGDYPG CTDLAYTKAA SDGADVLGCP VQMTKDRVPF CLGSINLIDK TTAAQSPFSN
IATTVPELKI TNGILTINLT WTEIQSLKPA ISNRWSEFRL FRNPKARNDG NFMSLADFLT
FAKNATSVSG VMISVENAAY MAKQGLGVTG AVLDALSKAG YNNQTAKKVL IQSTDSSVLE
EFKKSSYELV YGVGDDIRDI ESSTILEIKT FAKSVIITKQ SVFPSEDAFI IAQTNVVQKL
QSSNLTVYVQ LLNNEFVSQS WDFFSDSSVE LNNYAVGAGI DGVITEYPAT AARYRRNRCL
GFKDSPPYMT SVQPGSLLEL MAPQFLPPAE APNPVLTESD VVEPPLPPVA KINPSNDNGS
AIAPTPPNGQ SSVVASILMS SVAILLATIM VV
//