ID Q3S3D9_RHILE Unreviewed; 302 AA.
AC Q3S3D9;
DT 11-OCT-2005, integrated into UniProtKB/TrEMBL.
DT 11-OCT-2005, sequence version 1.
DT 24-JAN-2024, entry version 94.
DE RecName: Full=RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961};
DE AltName: Full=RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961};
GN Name=rpoH {ECO:0000256|HAMAP-Rule:MF_00961,
GN ECO:0000313|EMBL:AAZ99132.1};
GN ORFNames=CUJ84_Chr003806 {ECO:0000313|EMBL:AUW44137.1}, DLJ82_1997
GN {ECO:0000313|EMBL:AXA39597.1}, EHI47_06950
GN {ECO:0000313|EMBL:RWX34496.1}, ELH90_20695
GN {ECO:0000313|EMBL:TAY53874.1}, GUK36_16295
GN {ECO:0000313|EMBL:NEK50989.1}, HNP83_001704
GN {ECO:0000313|EMBL:MBB5257006.1};
OS Rhizobium leguminosarum.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
OX NCBI_TaxID=384 {ECO:0000313|EMBL:AAZ99132.1};
RN [1] {ECO:0000313|EMBL:AAZ99132.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=A34 {ECO:0000313|EMBL:AAZ99132.1};
RX PubMed=16944097; DOI=10.1007/s00203-006-0164-y;
RA Gould P., Maguire M., Lund P.A.;
RT "Distinct mechanisms regulate expression of the two major groEL homologues
RT in Rhizobium leguminosarum.";
RL Arch. Microbiol. 187:1-14(2007).
RN [2] {ECO:0000313|EMBL:AUW44137.1, ECO:0000313|Proteomes:UP000238523}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Norway {ECO:0000313|EMBL:AUW44137.1,
RC ECO:0000313|Proteomes:UP000238523};
RA Hoffrichter A., Liang J., Brachmann A., Marin M.;
RT "Complete genome of Rhizobium leguminosarum Norway, an ineffective micro-
RT symbiont.";
RL Submitted (NOV-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AXA39597.1, ECO:0000313|Proteomes:UP000251166}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 14479 {ECO:0000313|EMBL:AXA39597.1,
RC ECO:0000313|Proteomes:UP000251166};
RA Chakraborty R.;
RT "Rhizobium leguminosarum strain:ATCC 14479 Genome sequencing and
RT assembly.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:RWX34496.1, ECO:0000313|Proteomes:UP000283817}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WSM448 {ECO:0000313|EMBL:RWX34496.1,
RC ECO:0000313|Proteomes:UP000283817};
RA De Meyer S.E.;
RT "RHIZO-ID as a novel technology for direct rhizobia identification.";
RL Submitted (JAN-2019) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:TAY53874.1, ECO:0000313|Proteomes:UP000292974}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SM135B {ECO:0000313|EMBL:TAY53874.1,
RC ECO:0000313|Proteomes:UP000292974};
RA Cavassim M.I.A., Moeskjaer S., Moslemi C., Fields B., Bachmann A.,
RA Vilhjalmsson B., Schierup M.H., Young J.P.W., Andersen S.U.;
RT "The genomic architecture of introgression among sibling species of
RT bacteria.";
RL Submitted (FEB-2019) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:NEK50989.1, ECO:0000313|Proteomes:UP000471409}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JHI944 {ECO:0000313|EMBL:NEK50989.1,
RC ECO:0000313|Proteomes:UP000471409};
RA Maluk M., Francesc Ferrando Molina F., Lopez Del Egido L., Lafos M.,
RA Langarica-Fuentes A., Gebre Yohannes G., Young M.W., Martin P.,
RA Gantlett R., Kenicer G., Hawes C., Begg G.S., Quilliam R.S., Squire G.R.,
RA Poole P.S., Young P.W., Iannetta P.M., James E.K.;
RT "Rhizobium genotypes associated with high levels of biological nitrogen
RT fixation by grain legumes in a temperate-maritime cropping system.";
RL Submitted (JAN-2020) to the EMBL/GenBank/DDBJ databases.
RN [7] {ECO:0000313|EMBL:MBB5257006.1, ECO:0000313|Proteomes:UP000549598}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 106839 {ECO:0000313|EMBL:MBB5257006.1,
RC ECO:0000313|Proteomes:UP000549598};
RA Goeker M.;
RT "Genomic Encyclopedia of Type Strains, Phase IV (KMG-IV): sequencing the
RT most valuable type-strain genomes for metagenomic binning, comparative
RT biology and taxonomic classification.";
RL Submitted (AUG-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of RNA polymerase to specific initiation sites and are then
CC released. This sigma factor is involved in regulation of expression of
CC heat shock genes. {ECO:0000256|HAMAP-Rule:MF_00961}.
CC -!- SUBUNIT: Interacts with the RNA polymerase core enzyme.
CC {ECO:0000256|HAMAP-Rule:MF_00961}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961}.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. RpoH subfamily.
CC {ECO:0000256|HAMAP-Rule:MF_00961}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|HAMAP-Rule:MF_00961}.
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DR EMBL; DQ173161; AAZ99132.1; -; Genomic_DNA.
DR EMBL; CP025012; AUW44137.1; -; Genomic_DNA.
DR EMBL; CP030760; AXA39597.1; -; Genomic_DNA.
DR EMBL; JACHFX010000001; MBB5257006.1; -; Genomic_DNA.
DR EMBL; WXXP01000006; NEK50989.1; -; Genomic_DNA.
DR EMBL; SBHX01000015; RWX34496.1; -; Genomic_DNA.
DR EMBL; SIOP01000001; TAY53874.1; -; Genomic_DNA.
DR RefSeq; WP_018243318.1; NZ_WXXP01000006.1.
DR AlphaFoldDB; Q3S3D9; -.
DR GeneID; 75221512; -.
DR Proteomes; UP000238523; Chromosome.
DR Proteomes; UP000251166; Chromosome.
DR Proteomes; UP000283817; Unassembled WGS sequence.
DR Proteomes; UP000292974; Unassembled WGS sequence.
DR Proteomes; UP000471409; Unassembled WGS sequence.
DR Proteomes; UP000549598; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:UniProtKB-UniRule.
DR GO; GO:0009408; P:response to heat; IEA:UniProtKB-UniRule.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.20.140.160; -; 1.
DR HAMAP; MF_00961; Sigma70_RpoH; 1.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR012759; RNA_pol_sigma_RpoH_proteobac.
DR NCBIfam; TIGR02392; rpoH_proteo; 1.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30376:SF3; RNA POLYMERASE SIGMA FACTOR RPOH; 1.
DR PANTHER; PTHR30376; SIGMA FACTOR RPOH HEAT SHOCK RELATED; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR PROSITE; PS00715; SIGMA70_1; 1.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00961};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW Rule:MF_00961};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082, ECO:0000256|HAMAP-
KW Rule:MF_00961};
KW Stress response {ECO:0000256|ARBA:ARBA00023016, ECO:0000256|HAMAP-
KW Rule:MF_00961};
KW Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW Rule:MF_00961};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015, ECO:0000256|HAMAP-
KW Rule:MF_00961}.
FT DOMAIN 77..90
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
FT DOMAIN 254..280
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
FT DNA_BIND 255..274
FT /note="H-T-H motif"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00961"
FT REGION 53..122
FT /note="Sigma-70 factor domain-2"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00961"
FT MOTIF 77..80
FT /note="Interaction with polymerase core subunit RpoC"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00961"
SQ SEQUENCE 302 AA; 34573 MW; 2AF35EFBE80B2B66 CRC64;
MARNTLPSIT AGEAGLNRYL DEIRKFPMLE PQQEYMLAKR YAEHGDRDAA HKLVTSHLRL
VAKIAMGYRG YGLPIGEVVS EGNVGLMQAV KKFDAERGFR LATYAMWWIK ASIQEYILRS
WSLVKMGTTA NQKRLFFNLR RLKGRIQAID DGDLKPEHVS EIATKLNVSE EEVISMNRRL
SGDASLNAPI KAAEGDSGQW QDWLVDDHDS QEDVLIEQDE LDTRRRMLAK AMSVLNERER
RIFEARRLAE DPVTLEDLST EFDISRERVR QIEVRAFEKV QDAVRKEALE RAKAVRVVEA
TA
//
