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Database: UniProt
Entry: Q42804_SOYBN
LinkDB: Q42804_SOYBN
Original site: Q42804_SOYBN 
ID   Q42804_SOYBN            Unreviewed;       392 AA.
AC   Q42804;
DT   01-NOV-1996, integrated into UniProtKB/TrEMBL.
DT   01-NOV-1996, sequence version 1.
DT   24-JAN-2024, entry version 104.
DE   RecName: Full=phosphoribosylamine--glycine ligase {ECO:0000256|ARBA:ARBA00013255};
DE            EC=6.3.4.13 {ECO:0000256|ARBA:ARBA00013255};
DE   AltName: Full=Glycinamide ribonucleotide synthetase {ECO:0000256|ARBA:ARBA00042242};
DE   AltName: Full=Phosphoribosylglycinamide synthetase {ECO:0000256|ARBA:ARBA00042864};
DE   Flags: Fragment;
GN   Name=purD {ECO:0000313|EMBL:CAA65607.1};
OS   Glycine max (Soybean) (Glycine hispida).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC   NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC   Glycine subgen. Soja.
OX   NCBI_TaxID=3847 {ECO:0000313|EMBL:CAA65607.1};
RN   [1] {ECO:0000313|EMBL:CAA65607.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Root nodule {ECO:0000313|EMBL:CAA65607.1};
RA   Schnorr K.M., Laloue M., Hirel B.;
RT   "Isolation of cDNAs encoding two purine biosynthetic enzymes of soybean and
RT   expression of the corresponding transcripts in roots and root nodules.";
RL   Submitted (MAR-1996) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-
CC       (5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-
CC       diphosphate: step 2/2. {ECO:0000256|ARBA:ARBA00005174}.
CC   -!- SIMILARITY: Belongs to the GARS family.
CC       {ECO:0000256|ARBA:ARBA00038345}.
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DR   EMBL; X96864; CAA65607.1; -; mRNA.
DR   PIR; T07778; T07778.
DR   AlphaFoldDB; Q42804; -.
DR   ProMEX; Q42804; -.
DR   UniPathway; UPA00074; UER00125.
DR   ExpressionAtlas; Q42804; baseline and differential.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:InterPro.
DR   GO; GO:0004637; F:phosphoribosylamine-glycine ligase activity; IEA:UniProtKB-EC.
DR   GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-UniPathway.
DR   GO; GO:0009113; P:purine nucleobase biosynthetic process; IEA:InterPro.
DR   Gene3D; 3.40.50.20; -; 1.
DR   Gene3D; 3.30.1490.20; ATP-grasp fold, A domain; 1.
DR   Gene3D; 3.30.470.20; ATP-grasp fold, B domain; 1.
DR   Gene3D; 3.90.600.10; Phosphoribosylglycinamide synthetase, C-terminal domain; 1.
DR   InterPro; IPR011761; ATP-grasp.
DR   InterPro; IPR013815; ATP_grasp_subdomain_1.
DR   InterPro; IPR016185; PreATP-grasp_dom_sf.
DR   InterPro; IPR020561; PRibGlycinamid_synth_ATP-grasp.
DR   InterPro; IPR000115; PRibGlycinamide_synth.
DR   InterPro; IPR020560; PRibGlycinamide_synth_C-dom.
DR   InterPro; IPR037123; PRibGlycinamide_synth_C_sf.
DR   InterPro; IPR020559; PRibGlycinamide_synth_CS.
DR   InterPro; IPR020562; PRibGlycinamide_synth_N.
DR   InterPro; IPR011054; Rudment_hybrid_motif.
DR   NCBIfam; TIGR00877; purD; 1.
DR   PANTHER; PTHR43472; PHOSPHORIBOSYLAMINE--GLYCINE LIGASE; 1.
DR   PANTHER; PTHR43472:SF1; PHOSPHORIBOSYLAMINE--GLYCINE LIGASE, CHLOROPLASTIC; 1.
DR   Pfam; PF01071; GARS_A; 1.
DR   Pfam; PF02843; GARS_C; 1.
DR   Pfam; PF02844; GARS_N; 1.
DR   SMART; SM01209; GARS_A; 1.
DR   SMART; SM01210; GARS_C; 1.
DR   SUPFAM; SSF56059; Glutathione synthetase ATP-binding domain-like; 1.
DR   SUPFAM; SSF52440; PreATP-grasp domain; 1.
DR   SUPFAM; SSF51246; Rudiment single hybrid motif; 1.
DR   PROSITE; PS50975; ATP_GRASP; 1.
DR   PROSITE; PS00184; GARS; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|PROSITE-
KW   ProRule:PRU00409};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:CAA65607.1};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|PROSITE-
KW   ProRule:PRU00409}; Purine biosynthesis {ECO:0000256|ARBA:ARBA00022755}.
FT   DOMAIN          91..299
FT                   /note="ATP-grasp"
FT                   /evidence="ECO:0000259|PROSITE:PS50975"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:CAA65607.1"
SQ   SEQUENCE   392 AA;  42184 MW;  028CF929F70985BC CRC64;
     QRSPSCETVL CAPGNAPIAS SGNATCISDL EVYDGAAVIS FCRKMGVGLV VVGPEAPLVA
     GLTNELLKAG IPTFGPSAEA AALEGSKNFM KHLCDKYDIP TAKYKTFIDP SAANEYIQEQ
     GAPIVIKADG LAAGKGVTVA MTLEEANEAV DQCWSRVILV LQVVVSLLRN FYKEKKHPFL
     HWLMEKMQFH YNPAQDHKRV GDGDTGPNTG GMGAYSPAPI ITKELQSIVI HSIIIPTVKG
     MSAEGCKFVG VLYAGLMIEK KSGMPKLIEY NVRFGDPECQ VLMVRLESDL VQVLLSACRG
     ELSGLSLNWS PGSAMVVVMA SNGYPGSYEK GTVIENLQEA ELAAPGIKIF HAGTLLTLKE
     NLLQLGGVFL GLLPREMILK WHVIELIKLL RS
//
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