ID GYRB_ACIBA Reviewed; 388 AA.
AC Q43907; Q59090; Q9ZA10;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 11-JAN-2001, sequence version 2.
DT 24-JAN-2024, entry version 105.
DE RecName: Full=DNA gyrase subunit B;
DE EC=5.6.2.2 {ECO:0000255|PROSITE-ProRule:PRU00995};
DE Flags: Fragment;
GN Name=gyrB;
OS Acinetobacter baumannii.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae;
OC Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.
OX NCBI_TaxID=470;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 17945 / CIP 70.22, ATCC 17961 / CIP 70.32 / B55, and
RC ATCC 19606 / DSM 30007 / CCUG 19096 / CIP 70.34 / JCM 6841 / LMG 1041 /
RC NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81;
RX PubMed=10028249; DOI=10.1099/00207713-49-1-87;
RA Yamamoto S., Bouvet P.J.M., Harayama S.;
RT "Phylogenetic structures of the genus Acinetobacter based on gyrB
RT sequences: comparison with the grouping by DNA-DNA hybridization.";
RL Int. J. Syst. Bacteriol. 49:87-95(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 3-118 AND 289-388.
RC STRAIN=ATCC 19606 / DSM 30007 / CCUG 19096 / CIP 70.34 / JCM 6841 / LMG
RC 1041 / NBRC 109757 / NCIMB 12457 / NCTC 12156 / 81;
RX PubMed=8934907; DOI=10.1099/00207713-46-2-506;
RA Yamamoto S., Harayama S.;
RT "Phylogenetic analysis of Acinetobacter strains based on the nucleotide
RT sequences of gyrB genes and on the amino acid sequences of their
RT products.";
RL Int. J. Syst. Bacteriol. 46:506-511(1996).
CC -!- FUNCTION: A type II topoisomerase that negatively supercoils closed
CC circular double-stranded (ds) DNA in an ATP-dependent manner to
CC modulate DNA topology and maintain chromosomes in an underwound state.
CC Negative supercoiling favors strand separation, and DNA replication,
CC transcription, recombination and repair, all of which involve strand
CC separation. Also able to catalyze the interconversion of other
CC topological isomers of dsDNA rings, including catenanes and knotted
CC rings. Type II topoisomerases break and join 2 DNA strands
CC simultaneously in an ATP-dependent manner.
CC {ECO:0000250|UniProtKB:P0AES6}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP-dependent breakage, passage and rejoining of double-
CC stranded DNA.; EC=5.6.2.2; Evidence={ECO:0000255|PROSITE-
CC ProRule:PRU00995};
CC -!- SUBUNIT: Heterotetramer, composed of two GyrA and two GyrB chains. In
CC the heterotetramer, GyrA contains the active site tyrosine that forms a
CC transient covalent intermediate with DNA, while GyrB binds cofactors
CC and catalyzes ATP hydrolysis. {ECO:0000250|UniProtKB:P0AES6}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:P0AES6}.
CC -!- MISCELLANEOUS: Few gyrases are as efficient as E.coli at forming
CC negative supercoils. Not all organisms have 2 type II topoisomerases;
CC in organisms with a single type II topoisomerase this enzyme also has
CC to decatenate newly replicated chromosomes.
CC -!- SIMILARITY: Belongs to the type II topoisomerase GyrB family.
CC {ECO:0000305}.
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DR EMBL; AB008684; BAA75401.1; -; Genomic_DNA.
DR EMBL; AB008700; BAA75417.1; -; Genomic_DNA.
DR EMBL; AB008699; BAA75416.1; -; Genomic_DNA.
DR EMBL; D73428; BAA11153.1; -; Genomic_DNA.
DR EMBL; D73413; BAA11138.1; -; Genomic_DNA.
DR PIR; T43897; T43897.
DR AlphaFoldDB; Q43907; -.
DR SMR; Q43907; -.
DR STRING; 400667.A1S_0004; -.
DR eggNOG; COG0187; Bacteria.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003918; F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity; IEA:UniProtKB-EC.
DR GO; GO:0006265; P:DNA topological change; IEA:InterPro.
DR CDD; cd00822; TopoII_Trans_DNA_gyrase; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.40.50.670; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR001241; Topo_IIA.
DR InterPro; IPR013760; Topo_IIA-like_dom_sf.
DR InterPro; IPR000565; Topo_IIA_B.
DR InterPro; IPR013759; Topo_IIA_B_C.
DR InterPro; IPR013506; Topo_IIA_bsu_dom2.
DR InterPro; IPR018522; TopoIIA_CS.
DR InterPro; IPR006171; TOPRIM_domain.
DR PANTHER; PTHR45866:SF1; DNA GYRASE SUBUNIT B, MITOCHONDRIAL; 1.
DR PANTHER; PTHR45866; DNA GYRASE/TOPOISOMERASE SUBUNIT B; 1.
DR Pfam; PF00204; DNA_gyraseB; 1.
DR Pfam; PF01751; Toprim; 1.
DR PRINTS; PR01159; DNAGYRASEB.
DR PRINTS; PR00418; TPI2FAMILY.
DR SMART; SM00433; TOP2c; 1.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF56719; Type II DNA topoisomerase; 1.
DR PROSITE; PS00177; TOPOISOMERASE_II; 1.
DR PROSITE; PS50880; TOPRIM; 1.
PE 3: Inferred from homology;
KW ATP-binding; Cytoplasm; DNA-binding; Isomerase; Nucleotide-binding;
KW Topoisomerase.
FT CHAIN <1..>388
FT /note="DNA gyrase subunit B"
FT /id="PRO_0000145274"
FT DOMAIN 312..>388
FT /note="Toprim"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00995"
FT SITE 343
FT /note="Interaction with DNA"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00995"
FT SITE 346
FT /note="Interaction with DNA"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00995"
FT CONFLICT 110
FT /note="Y -> F (in Ref. 2; BAA11153)"
FT /evidence="ECO:0000305"
FT NON_TER 1
FT NON_TER 388
SQ SEQUENCE 388 AA; 43111 MW; 826C99662039D591 CRC64;
DNSYKVSGGL HGVGVSVVNA LSSKLHLTIY RAGQIHEQEY HHGDPQYPLR VIGETDNTGT
TVRFWPSAET FSQTIFNVEI LARRLRELSF LNAGVRIVLR DERINLEHVY DYEGGLSEFV
KYINEGKNHL NEIFHFTADA DNGIAVEVAL QWNDSYQENV RCFTNNIPQK DGGTHLAGFR
AALTRGLNQY LENENILKKE KVNVTGDDAR EGLTAIISVK VPDPKFSSQT KEKLVSSEVK
PAVEQAMNKE FSAYLLENPQ AAKSIAGKII DAARARDAAR KAREMTRRKS ALDIAGLPGK
LADCQEKDPA LSELYLVEGD SAGGSAKQGR NRKMQAILPL KGKILNVERA RFDKMISSQE
VGTLITALGC GIGREEYNPD KLRYHKII
//
