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Database: UniProt
Entry: Q488B5_COLP3
LinkDB: Q488B5_COLP3
Original site: Q488B5_COLP3 
ID   Q488B5_COLP3            Unreviewed;       527 AA.
AC   Q488B5;
DT   13-SEP-2005, integrated into UniProtKB/TrEMBL.
DT   13-SEP-2005, sequence version 1.
DT   28-FEB-2018, entry version 96.
DE   SubName: Full=Sigma 54-dependent transcriptional regulator {ECO:0000313|EMBL:AAZ28286.1};
GN   OrderedLocusNames=CPS_0851 {ECO:0000313|EMBL:AAZ28286.1};
OS   Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio
OS   psychroerythus).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Colwelliaceae; Colwellia.
OX   NCBI_TaxID=167879 {ECO:0000313|EMBL:AAZ28286.1, ECO:0000313|Proteomes:UP000000547};
RN   [1] {ECO:0000313|EMBL:AAZ28286.1, ECO:0000313|Proteomes:UP000000547}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=34H / ATCC BAA-681 {ECO:0000313|Proteomes:UP000000547};
RX   PubMed=16043709; DOI=10.1073/pnas.0504766102;
RA   Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X.,
RA   Moult J., Madupu R., Nelson W.C., Dodson R.J., Brinkac L.M.,
RA   Daugherty S.C., Durkin A.S., DeBoy R.T., Kolonay J.F., Sullivan S.A.,
RA   Zhou L., Davidsen T.M., Wu M., Huston A.L., Lewis M., Weaver B.,
RA   Weidman J.F., Khouri H., Utterback T.R., Feldblyum T.V., Fraser C.M.;
RT   "The psychrophilic lifestyle as revealed by the genome sequence of
RT   Colwellia psychrerythraea 34H through genomic and proteomic
RT   analyses.";
RL   Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005).
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DR   EMBL; CP000083; AAZ28286.1; -; Genomic_DNA.
DR   RefSeq; WP_011041700.1; NC_003910.7.
DR   ProteinModelPortal; Q488B5; -.
DR   STRING; 167879.CPS_0851; -.
DR   EnsemblBacteria; AAZ28286; AAZ28286; CPS_0851.
DR   KEGG; cps:CPS_0851; -.
DR   eggNOG; ENOG4108JUA; Bacteria.
DR   eggNOG; COG3604; LUCA.
DR   HOGENOM; HOG000058487; -.
DR   KO; K12266; -.
DR   OMA; LEVHDCM; -.
DR   OrthoDB; POG091H03UM; -.
DR   BioCyc; CPSY167879:G1G4N-773-MONOMER; -.
DR   Proteomes; UP000000547; Chromosome.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.30.450.40; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00065; GAF; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110192}; Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000000547};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00009904};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110083};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000547};
KW   Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN      194    423       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   NP_BIND     222    229       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   NP_BIND     285    294       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   COILED      165    185       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   527 AA;  58618 MW;  5B863957D01598B6 CRC64;
     MKKISSTAVI ELALDLATSL NTKDRFDRLL DTVRKTITCD AVALLSYHGD VLKPIALQGL
     SRDTLGRRFY VEEHPRFLAL CQSKSPIRFA ADSPLPDPYD GLLIDREGDL PVHSCMGLPL
     YYDDKLLGLL TIDSLTPHDF EDIDVRMLEV ISAIAAATLN TAFLLDQLES RADHSQRVVA
     ELTEEAWKRD GGELIGESPI MSQLKQELDI VASSDFNILI YGETGVGKEL VARTLHQKSL
     RQHGPMVYVN CAALPENLIE SELFGHVKGA FTGADRNRAG KFSLADGGTL FLDEIGELPF
     GAQSKILRAI QSNEIQPVGQ DNVEEVDVRI VAATNRDLKE EVGEGRFRAD LYHRLSVYPI
     RVPRLYERVG DVQLLAGYFV EQTRRKLGIA QLKITEQAVA HLTQYNWPGN VRELEHVVSR
     ATLKARARQR DKAIISIDKI DCGTLNAVGA ELPIELIAES GLSSIAEQQV NLNLKVETES
     FQKQLISRIL KEEEGNWAAA ARRLSTDRAN LNRIAKRLNI KVVKSII
//
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