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Database: UniProt
Entry: Q4DDX5_TRYCC
LinkDB: Q4DDX5_TRYCC
Original site: Q4DDX5_TRYCC 
ID   Q4DDX5_TRYCC            Unreviewed;      1731 AA.
AC   Q4DDX5;
DT   13-SEP-2005, integrated into UniProtKB/TrEMBL.
DT   13-SEP-2005, sequence version 1.
DT   24-JAN-2024, entry version 88.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN   ORFNames=Tc00.1047053509011.20 {ECO:0000313|EMBL:EAN90718.1};
OS   Trypanosoma cruzi (strain CL Brener).
OC   Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina;
OC   Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum.
OX   NCBI_TaxID=353153 {ECO:0000313|EMBL:EAN90718.1, ECO:0000313|Proteomes:UP000002296};
RN   [1] {ECO:0000313|EMBL:EAN90718.1, ECO:0000313|Proteomes:UP000002296}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CL Brener {ECO:0000313|EMBL:EAN90718.1,
RC   ECO:0000313|Proteomes:UP000002296};
RX   PubMed=16020725; DOI=10.1126/science.1112631;
RA   El-Sayed N.M., Myler P.J., Bartholomeu D.C., Nilsson D., Aggarwal G.,
RA   Tran A.N., Ghedin E., Worthey E.A., Delcher A.L., Blandin G.,
RA   Westenberger S.J., Caler E., Cerqueira G.C., Branche C., Haas B.,
RA   Anupama A., Arner E., Aslund L., Attipoe P., Bontempi E., Bringaud F.,
RA   Burton P., Cadag E., Campbell D.A., Carrington M., Crabtree J., Darban H.,
RA   da Silveira J.F., de Jong P., Edwards K., Englund P.T., Fazelina G.,
RA   Feldblyum T., Ferella M., Frasch A.C., Gull K., Horn D., Hou L., Huang Y.,
RA   Kindlund E., Klingbeil M., Kluge S., Koo H., Lacerda D., Levin M.J.,
RA   Lorenzi H., Louie T., Machado C.R., McCulloch R., McKenna A., Mizuno Y.,
RA   Mottram J.C., Nelson S., Ochaya S., Osoegawa K., Pai G., Parsons M.,
RA   Pentony M., Pettersson U., Pop M., Ramirez J.L., Rinta J., Robertson L.,
RA   Salzberg S.L., Sanchez D.O., Seyler A., Sharma R., Shetty J., Simpson A.J.,
RA   Sisk E., Tammi M.T., Tarleton R., Teixeira S., Van Aken S., Vogt C.,
RA   Ward P.N., Wickstead B., Wortman J., White O., Fraser C.M., Stuart K.D.,
RA   Andersson B.;
RT   "The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas
RT   disease.";
RL   Science 309:409-415(2005).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|ARBA:ARBA00006460, ECO:0000256|RuleBase:RU004279}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EAN90718.1}.
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DR   EMBL; AAHK01000598; EAN90718.1; -; Genomic_DNA.
DR   RefSeq; XP_812569.1; XM_807476.1.
DR   AlphaFoldDB; Q4DDX5; -.
DR   SMR; Q4DDX5; -.
DR   STRING; 353153.Q4DDX5; -.
DR   PaxDb; 353153-Q4DDX5; -.
DR   EnsemblProtists; EAN90718; EAN90718; Tc00.1047053509011.20.
DR   GeneID; 3543784; -.
DR   KEGG; tcr:509011.20; -.
DR   eggNOG; KOG0260; Eukaryota.
DR   InParanoid; Q4DDX5; -.
DR   OMA; KTSDTGY; -.
DR   OrthoDB; 169836at2759; -.
DR   Proteomes; UP000002296; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0043229; C:intracellular organelle; IEA:UniProt.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   CDD; cd02733; RNAP_II_RPB1_N; 1.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.150.390; -; 1.
DR   Gene3D; 2.40.40.20; -; 1.
DR   Gene3D; 3.30.1360.140; -; 1.
DR   Gene3D; 6.10.250.2940; -; 1.
DR   Gene3D; 6.20.50.80; -; 1.
DR   Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR   Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR   Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR007075; RNA_pol_Rpb1_6.
DR   InterPro; IPR007073; RNA_pol_Rpb1_7.
DR   InterPro; IPR038593; RNA_pol_Rpb1_7_sf.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR19376:SF37; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   Pfam; PF04992; RNA_pol_Rpb1_6; 1.
DR   Pfam; PF04990; RNA_pol_Rpb1_7; 1.
DR   SMART; SM00663; RPOLA_N; 1.
DR   SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279};
KW   Reference proteome {ECO:0000313|Proteomes:UP000002296};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT   DOMAIN          225..524
FT                   /note="RNA polymerase N-terminal"
FT                   /evidence="ECO:0000259|SMART:SM00663"
FT   REGION          1679..1731
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1679..1699
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1731 AA;  193078 MW;  FC783A1468E3BE28 CRC64;
     MSGGAPLPPS QMDLQKVVEV QFEMFKEKQI KDYAVCLVEH AKSYERGQPV RGGINDLRMG
     TTDFEFACET CHRKHPECPG HFGYIDLAEP VFNIGVFDIV LQVLKCVCKS CGALLMDTND
     PQVHKKLQHL TGVNRLRQVV KMCGMKCRMS TDATTPEEAV VARGCGATQP RIGRYLGIYP
     TLIIKATLEE QDMVWHADTA RQVLDRVSDE DARVMGFDAL RCHPRDLVLT VLPVPPPQVR
     PAISFGSLKS DDELTHQIMS IVKRNNQLRK DKESDVQVAV DRSRALLQEH VAAYFNNASM
     YYKPTKVNDT KKLKSLTERL KGKYGRLRGN LMGKRVDFSA RTVITGDPNI DVDEVGVPFS
     IAMTLTFPER VSAVNKKRLT EFVRRPVYPS ANYIHHPNGT TTKLALRRDR SKVTLNIGDV
     VERHVINGDV VLFNRQPTLH RMSMMGHRVR VLNYNTFRLN LSCTTPYNAD FDGDEMNLHV
     PQSLLTKAEL IEMMMVPKNF VSPNKSAPCM GIVQDSLLGS YRLTDKDTFL DKYFVQSVAL
     WLDLWQLPVP AVLKPRPLWT GKQVFSLILP EVNHPATPQE RPPFPHNDSS IMIRRGQLLC
     GPITKGIVGA APGSLIHVIF NERGSDEVAR FINGVQRITT FFLINFGFSV GVQDTVADAD
     TLRQMNEVLV KTRENVEKIG AAANNRTLNR KAGMTLLQSF EADVNSALNK CREEAAKKAL
     SNVRRTNSFK VMIEAGSKGT DLNICQIAVF VGQQNVAGSR IPFGFRRRTL PHFMLDDYGE
     TSRGMANRGY VEGLKPHEFF FHTMAGREGL IDTAVKTSDT GYLQRKLIKA LEDVHAAYDG
     TVRNANQELI QFMYGEDGLD GARIEGGQLF PLPFRDNKEM ESTYKYEYDE TGAFNEKVGG
     AYMDPHVKKM LRADPENVRK LQSEFDQLMA DRDWARRMMD LEEREKLKLN LPVNIGRLIQ
     NARSTMGKRS QVSNLSPVTI IDHVRKLQED MLKLFPCYHK GVDGRIHNLL SRQRIENALT
     LFSVHLRQLL ASKRVLREYK LNDKAFEYLL KEIRTKYLQS LVSPGENIGA IAAQSCGEPA
     TQMTLNTFHN AGISSKNVTL GVPRLLELLN VSRHQKHASM NVSLYPPWDK KRTAQQAQHL
     IEYCTLESVT KRIQFIYDPD PRETVVEADR AILELEWSVM DESDERARLQ EVENGSPWIA
     RLELDADMFV DKALNMKDVK QAILRVDDGY VIETGMANDT KERTIRMRPK KNDGVDSIPR
     LKHAIPELLA RVHLRGIPGV RKALLKDRTT FTVDPATGKM TGEKTWLIDT DGTALRRAFI
     GIVDEKGNNI INATRTSSNK VPEVCSLLGI EAARYKMLHE LREAYLAYGL NINYRHYTIL
     VDTICQRGYL MAVSRVGINR SEMSGPLMRC SFEETVKVLM AAAAFGERDP VRGVSANLVL
     GNQARIGTGL FDLVLNMAAL QQAVPQEDAV APGKEVNVYH GLASTQNLPS SMPYRAKDHE
     TTPFVNDASL FFREGVGGSS SAAPLTASTL YGGMHEASAV HFSQAYPAMG MSDQRVRASS
     VSQPYSVMSS ASVYNPASMQ VPSALPSSVD YSEASSFHIQ SSMAMPSVPS SPQFEAPQAF
     GGGRFGGLSP AYVPSVMSSV ATQPYQCVGD SESQQSASYV PTLSPAYSAY TARRSVVASR
     ASASRVDQQS QQQEDDSASY LPKSPGLHGL PPPVGEFSLT EDPEEEEEGH Q
//
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