ID Q4QZL2_9VIRU Unreviewed; 239 AA.
AC Q4QZL2;
DT 19-JUL-2005, integrated into UniProtKB/TrEMBL.
DT 19-JUL-2005, sequence version 1.
DT 24-JAN-2024, entry version 35.
DE RecName: Full=Capsid protein {ECO:0000256|ARBA:ARBA00018091};
GN Name=CP {ECO:0000313|EMBL:CAP62465.1};
GN Synonyms=ORF4 {ECO:0000313|EMBL:AFZ75385.1};
OS Rice yellow mottle virus.
OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC Sobelivirales; Solemoviridae; Sobemovirus.
OX NCBI_TaxID=31744 {ECO:0000313|EMBL:CAI59704.1};
RN [1] {ECO:0000313|EMBL:CAI59704.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz16 {ECO:0000313|EMBL:CAI59704.1};
RX PubMed=15910330; DOI=10.1111/j.1365-294X.2005.02578.x;
RA Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA Winter S., Sere Y., Konate G., Fargette D.;
RT "Processes of diversification and dispersion of rice yellow mottle virus
RT inferred from large-scale and high-resolution phylogeographical studies.";
RL Mol. Ecol. 14:2097-2110(2005).
RN [2] {ECO:0000313|EMBL:CAP03082.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz209 {ECO:0000313|EMBL:CAP03082.1};
RA Pinel-Galzi A., Hebrard E., Fargette D.;
RT "Theme and variations in the evolutionary pathways to virulence of an RNA
RT plant virus species.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAP62465.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz213 {ECO:0000313|EMBL:CAP62465.1}, and Tz223
RC {ECO:0000313|EMBL:CAP62475.1};
RA Fargette D.;
RT "Rice yellow mottle virus, an RNA plant virus, evolves as rapidly as most
RT RNA animal viruses.";
RL Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:AFZ75385.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz16 {ECO:0000313|EMBL:AFZ75385.1};
RX PubMed=23123216; DOI=10.1016/j.virusres.2012.10.023;
RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A.,
RA Ramavovololona P., Rabenantoandro Y., Fargette D.;
RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago;
RT Island systems and evolutionary time scale to study virus emergence.";
RL Virus Res. 0:0-0(2012).
RN [5] {ECO:0000313|EMBL:CAI59704.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Tz16 {ECO:0000313|EMBL:CAI59704.1};
RA Traore O., Sorho F., Pinel A., Abubakar Z.;
RT "Processes of diversification and dispersion of Rice yellow mottle virus
RT inferred from large-scale and high resolution phylogeographic studies.";
RL Mol. Ecol. 0:0-0(0).
CC -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC {ECO:0000256|ARBA:ARBA00007446}.
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DR EMBL; JX961551; AFZ75385.1; -; Genomic_RNA.
DR EMBL; AJ885157; CAI59704.1; -; mRNA.
DR EMBL; AM883058; CAP03082.1; -; Genomic_RNA.
DR EMBL; AM931231; CAP62465.1; -; Genomic_RNA.
DR EMBL; AM931241; CAP62475.1; -; Genomic_RNA.
DR GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 2.60.120.20; -; 1.
DR InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR InterPro; IPR029053; Viral_coat.
DR Pfam; PF00729; Viral_coat; 1.
DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1.
DR PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE 2: Evidence at transcript level;
KW Capsid protein {ECO:0000313|EMBL:CAI59704.1};
KW Virion {ECO:0000313|EMBL:CAI59704.1}.
FT DOMAIN 34..233
FT /note="Icosahedral viral capsid protein S"
FT /evidence="ECO:0000259|Pfam:PF00729"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..17
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 239 AA; 26107 MW; F352B1A162883DD4 CRC64;
MARKGKKTNS NQNQQGKKSR RPRGRSAEPR LQRAPVAQAS RISGTVPGPL SSNVWPINRS
VEFLMDFKRS ATSTEATILN CVPFNLPRVW SLARCYSLWK PTRWDVVYLP EISAAAAGSI
EMCYLYDYAD TVPNDTGKMS RTAGFVTSSV WYGAEGCHLL TGGSARNAVV ASMDCSRVDW
KRVTSSIPSG VDPNVVNTIL PARLAVRSSI KPAVDDTPGK LYAIVSMVLR DPVDPTLNT
//