ID   Q53KI2_ORYSJ            Unreviewed;      1288 AA.
AC   Q53KI2;
DT   24-MAY-2005, integrated into UniProtKB/TrEMBL.
DT   24-MAY-2005, sequence version 1.
DT   27-MAR-2024, entry version 95.
DE   SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABA93327.1};
GN   OrderedLocusNames=LOC_Os11g26120 {ECO:0000313|EMBL:ABA93327.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA93327.1};
RN   [1] {ECO:0000313|EMBL:ABA93327.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG   The rice chromosomes 11 and 12 sequencing consortia;
RT   "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT   genes and recent gene duplications.";
RL   BMC Biol. 3:20-20(2005).
RN   [2] {ECO:0000313|EMBL:ABA93327.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL   Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:ABA93327.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; DP000010; ABA93327.1; -; Genomic_DNA.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR005162; Retrotrans_gag_dom.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR   Pfam; PF03732; Retrotrans_gag; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50879; RNASE_H_1; 1.
PE   4: Predicted;
FT   DOMAIN          896..1025
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|PROSITE:PS50879"
FT   DOMAIN          1102..1281
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          434..478
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          499..530
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        506..530
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1288 AA;  145657 MW;  31FD9DF54C6049B8 CRC64;
     MPKDIEMHIL DIKIILKISV PIRQPRLHHQ RLRQDFSPRL GFNQSGRDQI SAPFGIPNSA
     EVYPKIISTE LASNLLDKIQ STSTRPDQDD GAYPPILMKL PDDLAAIFTT RASSPHRPRR
     VPASAPARPS SREVGVILQP LGTVSTEQLD GYLSSPGVDS QPTEIMEYDD FGYRYDYRNL
     DDFDEVFEDN YTPLYFGIFM ADNETEEQPI TLLDTLLKED ALNQANHIVN ILNQTKTMIA
     ASVPVNSASV RTPTGSRVPH LRSQDYHQPS LSVADRYDDD VDGVAAFTSD LRQVDWLAGF
     KPTRIEKYDG TTNPESWLTV YGLAIRAAGG DSKAMANYLP VALVDSARSW LHGLPRGTIG
     SWAELRDHFI ANFQSTFERP GAQFDLYNVI QKSGESLRDY IRRFSEQCNK ISDISDDVII
     AAFTKGIRHE DLVGKFGRKP PKTVKQMFKK ATSMPKPKMS LPRPSSRAPL RSRRKIRRLQ
     GGVELPITRI ASFAEQYAKN TRKTSDGDQS TSKKKDDEDD ASTSFQDHRK ELNHIFRGPL
     AYESKRKQKL TEWEINAVQP DTPRYLRWSE TTIKFDRSDH PDRLVHPRRY PLVLDPVVRK
     VKLRRSLIDG GSALNILFAK TLDDMQIPCT ELKPSNAPFH GVIPGLSAKP LGQITLPDRK
     DAIKEELTKL LAAGFIKEVL HPDWLANPVL VRKKTGQWRM CVDYTDLNKS CPKDSFGLPH
     IDQIGRNVEA YVDDVVVKTK QKDDLITDLE ETFASIRAFR MKLNPEKCIF GVPSGKLLGS
     MVSHRGIQAN PEKINAILNM KPPSSQKDVQ KLTGCMAALS WKLSHYFQGH SVTVVTSFPL
     GDILHNREAK GRIAKWALEL MSLDISFKPR TLINSQALAD FVAEWTKCQE DTPAEKMEYQ
     TMHFDGSKRL SGTGAGVVLI SPTGERLRYV LCIHFSASHN VAEYEALLHG LRIAISLGIR
     RLIVCGDSQL VVNQVMKEWS CLDDNMTAYR QEVRKLEDKF DGLELTHVLR HNNEAADRLA
     NFGSKREAAP SDVFVEHLYE PTVPRKETIE ATDTQDISMI EADWREPLIR FLTKQELPQD
     KDEAKRISRR SRLYVIHETE LYKRNPSGIL QRYVSLEERR QLLKDIHSGI CRNHAAARTI
     VGKAYRQAVD KFSKWIEAKT VITITADKAR DFFINIVHRF GVPNRIITDN DTQFTGGVFK
     DFCEDFGIKI CYASIAHPMS NGQVERANGM VLQGIKARVF DRLHPYAGKW VEQLPSVLWS
     LRTTPSRATG QSPFFLVYGA EAMLPSEV
//