ID Q53N07_ORYSJ Unreviewed; 1535 AA.
AC Q53N07;
DT 24-MAY-2005, integrated into UniProtKB/TrEMBL.
DT 24-MAY-2005, sequence version 1.
DT 27-MAR-2024, entry version 114.
DE SubName: Full=Retrotransposon protein, putative, Ty3-gypsy subclass {ECO:0000313|EMBL:ABA92438.1};
GN OrderedLocusNames=LOC_Os11g14650 {ECO:0000313|EMBL:ABA92438.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABA92438.1};
RN [1] {ECO:0000313|EMBL:ABA92438.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2] {ECO:0000313|EMBL:ABA92438.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ABA92438.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000010; ABA92438.1; -; Genomic_DNA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR24559:SF434; RNA-DIRECTED DNA POLYMERASE HOMOLOG; 1.
DR PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 310..325
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 558..737
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1535 AA; 175604 MW; 24AFEE584749864C CRC64;
MVLTRSNGNG PNNNNNNNNN NNRENPTLAQ VLAQQAQLMS MMMQQLQNQQ NQGNNHAPPK
NKLAEFLRVR PPTFSSTTNP VEAGDWLHAI EKKLDLLQCT DQEKVSFASH QLHGSTSEWW
DHFRLNRTTA EPITWLEFIA AFWKTHIPSG VVSLKKKEFS ALTQGSRSVT EYLHEFNRLE
DVRTDEERQE KFLEGLNDEL SYPLMTGDYH DFQKLVDKAI RQEDKYNRME QKKRRIAHFK
AQQGNSQRPR LVMGPQAVSQ GGSSSVVHPQ RQFFNNNAGN NNRNQALRPV ATLIQHQPAK
REQGNKPGVC FNCGELGHYS DKCPKPRRVK VVPAQNNSTA PATKARVNHV AAAEAQGAPD
VILGTFPVNS VPATVLFDSG ATHSFLSMSF AGNHGMEIED LRRPLMVSAP SNQALLSQRS
PSVRIEIQGV PFLANLILLE SNDLDVILGM DWLARYKGVI DCTNRKVTLT SNDGQVVTVH
ALPSEPSRSS FNQITLEEIP IVWDYPDVFP DDLPSMPPKR DIEFRIDLVL GTTPIHKRPY
RMAANELAEV KRQVDDLLQK GYIRPSSSPW GAPVIFVEKK DHTQRMCVDY RVLNDVTIKN
KYPLPKIDDL FDQLKGATVF SKIDLRSGYH QLRIKEENIP KTAFTTRYGL FECTVMSFGL
TNAPAFFMNL MNKVFMEYLH KFVVVFIDDI LIYSRTKEEH EEHLRLALKK LREHQLYAMF
SKCEFWLSEV KFLGHFISAG GVAVDPSNVE SITNWKQPKI VSEIRSFLGL AGYYRRFIEN
FSKIAKPMTR LLQKDVKYKW QRRWLELIKD YDIEIHYHPG KANVVADALS RKGYCNATEG
RQLPLELCKE FERLNLGIVS RGFVAALEAK PTLIDQVREA QVNDPDIQEI KKNMRRGKAI
GFLEDEQGTV WLGERICIPD NKELKDAILR EAHDTLYSIH PGSTKMYQDL KEKFGWASMK
REIAEYVAVC DVCQRVKAEH QKPAGLLQLL KIPEWKWEEI GMDFITGLPR TSSGHDSIWV
IVDRHTEVAH FIPVRTTYSG SRLAELYMAR IVCLHGVPKK IVSDRVIKLV FKWLLMKRCM
VGSAALRFCG IKRENVRDLS FEEEDHVYLR VTPLRRVHRF HTKGKLAPRF VGPYKIVSRR
GEVTYQLELP QSLADVHNVF HVSQLKKCLR VPTKEANLEQ IEVQEDLTYV KKPIRILETD
ERRTRNRVNR FCKIPTFPES PTLQEKTLKS SKANKAKIPG VTSWYEDVIV VAEEEEEEVH
AVEPVDDDDV HVGGNGQHNT VDDADNDLEE MLRHAETEVV AGFARGLDNF DALKKATNDL
LYNEAKGCEK DFTLLRTVLE LMRLNARNGW SDSSFNDLLV LSKKFFPQPN SLPTSTNEAK
KLICPLSLGV RKIHACVNHC ILFRKEYEDL DKCPTCKSSR YKTSRSQSEG LDVALDDVEE
SNPCKDSNKK KIPQLVMWYL PVKKKETNKR KRNDAKVPAS PSVPFKKYSI FFKYLPYWKD
LDIRHSIDVM HLEKNVFDST IGTILDIPTK TKDGL
//
