ID RPOD_STAEQ Reviewed; 368 AA.
AC Q5HNY7;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 15-FEB-2005, sequence version 1.
DT 01-MAY-2013, entry version 64.
DE RecName: Full=RNA polymerase sigma factor RpoD;
GN Name=rpoD; OrderedLocusNames=SERP1127;
OS Staphylococcus epidermidis (strain ATCC 35984 / RP62A).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.
OX NCBI_TaxID=176279;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 35984 / RP62A;
RX PubMed=15774886; DOI=10.1128/JB.187.7.2426-2438.2005;
RA Gill S.R., Fouts D.E., Archer G.L., Mongodin E.F., DeBoy R.T.,
RA Ravel J., Paulsen I.T., Kolonay J.F., Brinkac L.M., Beanan M.J.,
RA Dodson R.J., Daugherty S.C., Madupu R., Angiuoli S.V., Durkin A.S.,
RA Haft D.H., Vamathevan J.J., Khouri H., Utterback T.R., Lee C.,
RA Dimitrov G., Jiang L., Qin H., Weidman J., Tran K., Kang K.H.,
RA Hance I.R., Nelson K.E., Fraser C.M.;
RT "Insights on evolution of virulence and resistance from the complete
RT genome analysis of an early methicillin-resistant Staphylococcus
RT aureus strain and a biofilm-producing methicillin-resistant
RT Staphylococcus epidermidis strain.";
RL J. Bacteriol. 187:2426-2438(2005).
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of RNA polymerase to specific initiation sites and are
CC then released (By similarity).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
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DR EMBL; CP000029; AAW54548.1; -; Genomic_DNA.
DR RefSeq; YP_188703.1; NC_002976.3.
DR ProteinModelPortal; Q5HNY7; -.
DR SMR; Q5HNY7; 97-368.
DR STRING; 176279.SERP1127; -.
DR PRIDE; Q5HNY7; -.
DR EnsemblBacteria; AAW54548; AAW54548; SERP1127.
DR GeneID; 3242916; -.
DR KEGG; ser:SERP1127; -.
DR PATRIC; 19613109; VBIStaEpi130894_1097.
DR eggNOG; COG0568; -.
DR HOGENOM; HOG000270273; -.
DR KO; K03086; -.
DR OMA; AERMSSF; -.
DR ProtClustDB; PRK09210; -.
DR BioCyc; SEPI176279:GJJB-1154-MONOMER; -.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-dependent transcription, initiation; IEA:InterPro.
DR Gene3D; 1.10.10.10; -; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR InterPro; IPR012760; RNA_pol_sigma_RpoD_C.
DR InterPro; IPR011991; WHTH_DNA-bd_dom.
DR Pfam; PF03979; Sigma70_r1_1; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma_r2; 1.
DR SUPFAM; SSF88659; Sigma_r3_r4; 2.
DR TIGRFAMs; TIGR02393; RpoD_Cterm; 1.
DR TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR PROSITE; PS00715; SIGMA70_1; 1.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW Complete proteome; DNA-binding; Sigma factor; Transcription;
KW Transcription regulation.
FT CHAIN 1 368 RNA polymerase sigma factor RpoD.
FT /FTId=PRO_0000093921.
FT DNA_BIND 329 348 H-T-H motif (By similarity).
FT MOTIF 159 172 Polymerase core binding (Potential).
SQ SEQUENCE 368 AA; 42256 MW; 69AA7FA5A5949F17 CRC64;
MSDNQVKIKK QTIDPTLTLE DVKKQLIDKG KKEGHLSHEE IAEKLQNFEM DSDQMDDFFD
QLNDNDITLV NEKDSSDTDD KINPNDLSAP PGVKINDPVR MYLKEIGRVN LLSAQEEIEL
AKRIEQGDEI AKSRLAEANL RLVVSIAKRY VGRGMLFLDL IQEGNMGLIK AVEKFDFSKG
FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI RVQRQLLQDL GRDPAPEEIG
EEMDLPPEKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DQEAQSPSDH AAYELLKEQL
EDVLDTLTDR EENVLRLRFG LDDGRTRTLE EVGKVFGVTR ERIRQIEAKA LRKLRHPSRS
KRLKDFMD
//
