ID Q5LM80_RUEPO Unreviewed; 341 AA.
AC Q5LM80;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 121.
DE SubName: Full=Transcriptional regulator, LacI family {ECO:0000313|EMBL:AAV96905.1};
GN OrderedLocusNames=SPO3684 {ECO:0000313|EMBL:AAV96905.1};
OS Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter
OS pomeroyi).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV96905.1, ECO:0000313|Proteomes:UP000001023};
RN [1] {ECO:0000313|EMBL:AAV96905.1, ECO:0000313|Proteomes:UP000001023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=15602564; DOI=10.1038/nature03170;
RA Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M.,
RA Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q.,
RA Daugherty S.C., Deboy R.T., Dodson R.J., Durkin A.S., Madupu R.,
RA Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N.;
RT "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine
RT environment.";
RL Nature 432:910-913(2004).
RN [2] {ECO:0007829|PDB:3KJX}
RP X-RAY CRYSTALLOGRAPHY (2.33 ANGSTROMS) OF 2-340.
RA Palani K., Burley S.K., Swaminathan S.;
RT "Crystal structure of a transcriptional regulator, Lacl family protein from
RT Silicibacter pomeroyi.";
RL Submitted (NOV-2009) to the PDB data bank.
RN [3] {ECO:0000313|EMBL:AAV96905.1, ECO:0000313|Proteomes:UP000001023}
RP GENOME REANNOTATION.
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA Rivers A.R., Smith C.B., Moran M.A.;
RT "An updated genome annotation for the model marine bacterium Ruegeria
RT pomeroyi DSS-3.";
RL Stand. Genomic Sci. 9:11-11(2014).
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DR EMBL; CP000031; AAV96905.1; -; Genomic_DNA.
DR RefSeq; WP_011049362.1; NC_003911.12.
DR PDB; 3KJX; X-ray; 2.33 A; A/B/C/D=2-340.
DR PDBsum; 3KJX; -.
DR AlphaFoldDB; Q5LM80; -.
DR SMR; Q5LM80; -.
DR STRING; 246200.SPO3684; -.
DR PaxDb; 246200-SPO3684; -.
DR DNASU; 3196203; -.
DR KEGG; sil:SPO3684; -.
DR eggNOG; COG1609; Bacteria.
DR HOGENOM; CLU_037628_6_3_5; -.
DR OrthoDB; 7170131at2; -.
DR EvolutionaryTrace; Q5LM80; -.
DR Proteomes; UP000001023; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01392; HTH_LacI; 1.
DR CDD; cd01575; PBP1_GntR; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR000843; HTH_LacI.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR001761; Peripla_BP/Lac1_sug-bd_dom.
DR InterPro; IPR028082; Peripla_BP_I.
DR PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR PANTHER; PTHR30146:SF33; TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF00356; LacI; 1.
DR Pfam; PF00532; Peripla_BP_1; 1.
DR SMART; SM00354; HTH_LACI; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS50932; HTH_LACI_2; 1.
PE 1: Evidence at protein level;
KW 3D-structure {ECO:0007829|PDB:3KJX};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 9..63
FT /note="HTH lacI-type"
FT /evidence="ECO:0000259|PROSITE:PS50932"
SQ SEQUENCE 341 AA; 37384 MW; A1A37FBA62A7FCA5 CRC64;
MTADTKRPLT LRDVSEASGV SEMTVSRVLR NRGDVSDATR ARVLAAAKEL GYVPNKIAGA
LASNRVNLVA VIIPSLSNMV FPEVLTGINQ VLEDTELQPV VGVTDYLPEK EEKVLYEMLS
WRPSGVIIAG LEHSEAARAM LDAAGIPVVE IMDSDGKPVD AMVGISHRRA GREMAQAILK
AGYRRIGFMG TKMPLDYRAR KRFEGFTEVL GKNGVEIEDR EFYSGGSALA KGREMTQAML
ERSPDLDFLY YSNDMIAAGG LLYLLEQGID IPGQIGLAGF NNVELLQGLP RKLATMDACR
LEIGRKAAEI IAKRLEDPEA EIETRITLEP KISYGDTLKR R
//
