ID Q5LQB9_RUEPO Unreviewed; 361 AA.
AC Q5LQB9;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 27-MAR-2024, entry version 100.
DE SubName: Full=Bacterial extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:AAV95821.1};
GN OrderedLocusNames=SPO2573 {ECO:0000313|EMBL:AAV95821.1};
OS Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter
OS pomeroyi).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV95821.1, ECO:0000313|Proteomes:UP000001023};
RN [1] {ECO:0000313|EMBL:AAV95821.1, ECO:0000313|Proteomes:UP000001023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=15602564; DOI=10.1038/nature03170;
RA Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M.,
RA Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q.,
RA Daugherty S.C., Deboy R.T., Dodson R.J., Durkin A.S., Madupu R.,
RA Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N.;
RT "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine
RT environment.";
RL Nature 432:910-913(2004).
RN [2] {ECO:0000313|EMBL:AAV95821.1, ECO:0000313|Proteomes:UP000001023}
RP GENOME REANNOTATION.
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA Rivers A.R., Smith C.B., Moran M.A.;
RT "An updated genome annotation for the model marine bacterium Ruegeria
RT pomeroyi DSS-3.";
RL Stand. Genomic Sci. 9:11-11(2014).
CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|ARBA:ARBA00004418}.
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DR EMBL; CP000031; AAV95821.1; -; Genomic_DNA.
DR RefSeq; WP_011048278.1; NC_003911.12.
DR AlphaFoldDB; Q5LQB9; -.
DR SMR; Q5LQB9; -.
DR STRING; 246200.SPO2573; -.
DR PaxDb; 246200-SPO2573; -.
DR KEGG; sil:SPO2573; -.
DR eggNOG; COG4663; Bacteria.
DR HOGENOM; CLU_036176_0_1_5; -.
DR OrthoDB; 9780733at2; -.
DR Proteomes; UP000001023; Chromosome.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0031317; C:tripartite ATP-independent periplasmic transporter complex; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0071702; P:organic substance transport; IEA:UniProt.
DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro.
DR CDD; cd13604; PBP2_TRAP_ketoacid_lactate_like; 1.
DR Gene3D; 3.40.190.170; Bacterial extracellular solute-binding protein, family 7; 1.
DR Gene3D; 3.40.190.10; Periplasmic binding protein-like II; 1.
DR InterPro; IPR018389; DctP_fam.
DR InterPro; IPR026289; SBP_TakP-like.
DR InterPro; IPR006311; TAT_signal.
DR InterPro; IPR019546; TAT_signal_bac_arc.
DR InterPro; IPR038404; TRAP_DctP_sf.
DR NCBIfam; TIGR01409; TAT_signal_seq; 1.
DR NCBIfam; NF037995; TRAP_S1; 1.
DR PANTHER; PTHR33376; -; 1.
DR PANTHER; PTHR33376:SF5; EXTRACYTOPLASMIC SOLUTE RECEPTOR PROTEIN; 1.
DR Pfam; PF03480; DctP; 1.
DR PIRSF; PIRSF039026; SiaP; 1.
DR PROSITE; PS51318; TAT; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PIRSR:PIRSR039026-2};
KW Periplasm {ECO:0000256|ARBA:ARBA00022764};
KW Reference proteome {ECO:0000313|Proteomes:UP000001023};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..24
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 25..361
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004259293"
FT BINDING 157
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR039026-1"
FT BINDING 178
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR039026-1"
FT BINDING 215
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR039026-2"
FT BINDING 216
FT /ligand="Na(+)"
FT /ligand_id="ChEBI:CHEBI:29101"
FT /evidence="ECO:0000256|PIRSR:PIRSR039026-2"
FT BINDING 241
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR039026-2"
SQ SEQUENCE 361 AA; 38436 MW; 1E68CEBEF2353E47 CRC64;
MDRRSFLKTS AMGGAAAAAT TALAAPAYAQ GKRTLTMVTT WGRGLAGVHD SAQRVADNIT
AMSDGNLTVD LKAAGELVGA FEVFDAVSSG QADMYHGADY YFVGQHPGYA FFTAVPFGMT
AQELVNWYYH DGGHELHDEL GQIFGLKSFL AGNTGAQAGG WFSKEINGPE DFNGLKFRMP
GLGGKALGKL GASVQNIPGS EVYQALSSGA IDGTEWIGPW ADEKAGFQEI TKTYYTAGFH
EPGAGLSVAT NREVFESLSP AHQKIIEVAA GECHQWNLAQ FLSNNGSALQ RLQAGGVKVL
EFPDSVWDAF GKASQDVMAE NMGDELFKKI HDSAMASMKS SSAWLNMSSG VYTAQRDRVL
G
//
