ID Q5LUQ1_RUEPO Unreviewed; 334 AA.
AC Q5LUQ1;
DT 01-FEB-2005, integrated into UniProtKB/TrEMBL.
DT 01-FEB-2005, sequence version 1.
DT 24-JAN-2024, entry version 116.
DE SubName: Full=Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAV94306.1};
GN OrderedLocusNames=SPO1002 {ECO:0000313|EMBL:AAV94306.1};
OS Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter
OS pomeroyi).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Ruegeria.
OX NCBI_TaxID=246200 {ECO:0000313|EMBL:AAV94306.1, ECO:0000313|Proteomes:UP000001023};
RN [1] {ECO:0000313|EMBL:AAV94306.1, ECO:0000313|Proteomes:UP000001023}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=15602564; DOI=10.1038/nature03170;
RA Moran M.A., Buchan A., Gonzalez J.M., Heidelberg J.F., Whitman W.B.,
RA Kiene R.P., Henriksen J.R., King G.M., Belas R., Fuqua C., Brinkac L.,
RA Lewis M., Johri S., Weaver B., Pai G., Eisen J.A., Rahe E., Sheldon W.M.,
RA Ye W., Miller T.R., Carlton J., Rasko D.A., Paulsen I.T., Ren Q.,
RA Daugherty S.C., Deboy R.T., Dodson R.J., Durkin A.S., Madupu R.,
RA Nelson W.C., Sullivan S.A., Rosovitz M.J., Haft D.H., Selengut J., Ward N.;
RT "Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine
RT environment.";
RL Nature 432:910-913(2004).
RN [2] {ECO:0000313|EMBL:AAV94306.1, ECO:0000313|Proteomes:UP000001023}
RP GENOME REANNOTATION.
RC STRAIN=ATCC 700808 / DSM 15171 / DSS-3
RC {ECO:0000313|Proteomes:UP000001023};
RX PubMed=25780504; DOI=10.1186/1944-3277-9-11;
RA Rivers A.R., Smith C.B., Moran M.A.;
RT "An updated genome annotation for the model marine bacterium Ruegeria
RT pomeroyi DSS-3.";
RL Stand. Genomic Sci. 9:11-11(2014).
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DR EMBL; CP000031; AAV94306.1; -; Genomic_DNA.
DR RefSeq; WP_011046750.1; NC_003911.12.
DR AlphaFoldDB; Q5LUQ1; -.
DR STRING; 246200.SPO1002; -.
DR PaxDb; 246200-SPO1002; -.
DR DNASU; 3195743; -.
DR KEGG; sil:SPO1002; -.
DR eggNOG; COG4977; Bacteria.
DR HOGENOM; CLU_000445_59_0_5; -.
DR OMA; CVATTHW; -.
DR OrthoDB; 9793400at2; -.
DR Proteomes; UP000001023; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR CDD; cd03136; GATase1_AraC_ArgR_like; 1.
DR Gene3D; 3.40.50.880; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR029062; Class_I_gatase-like.
DR InterPro; IPR002818; DJ-1/PfpI.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR PANTHER; PTHR43130; ARAC-FAMILY TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR43130:SF3; THIJ/PFPI FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14240); 1.
DR Pfam; PF01965; DJ-1_PfpI; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF52317; Class I glutamine amidotransferase-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001023}.
FT DOMAIN 234..332
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 334 AA; 36876 MW; ADA534EF1802B026 CRC64;
MTQTPFVSKA ASASVSLHYD GPPQDFRFLL LPKATMLAVA AAIEPLRIAN QLTKTQLYTW
HTMTENGAPV TCSNGLRITP DQALAPLPPE AMGFVCAGVE PEKSYSPAVL AWLRREYRHG
SALGGICTGA FALARAGLLE ERRFTLHWEN QPGFAEAFPN LTPTPNIYEL DGRITTCGGG
NTAIDMMLAL IEKQHGPKLA IVVADMCIHM RSGRQSPQRS ARSVAIGSRN PALIKAIELM
EAELEEPLTN DDLCDRLGIS RRQLERLFKR YLDQGPMAFY LNLRIERAFI FLNETNMTVA
EIAAATGFAN TSHLSRQFRA RYGASPHSFR KAWS
//