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Database: UniProt
Entry: Q5UUY3_9PAPI
LinkDB: Q5UUY3_9PAPI
Original site: Q5UUY3_9PAPI 
ID   Q5UUY3_9PAPI            Unreviewed;       611 AA.
AC   Q5UUY3;
DT   07-DEC-2004, integrated into UniProtKB/TrEMBL.
DT   07-DEC-2004, sequence version 1.
DT   08-NOV-2023, entry version 100.
DE   RecName: Full=Replication protein E1 {ECO:0000256|HAMAP-Rule:MF_04000, ECO:0000256|PIRNR:PIRNR003383};
DE            EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_04000, ECO:0000256|PIRNR:PIRNR003383};
DE   AltName: Full=ATP-dependent helicase E1 {ECO:0000256|HAMAP-Rule:MF_04000};
GN   Name=E1 {ECO:0000256|HAMAP-Rule:MF_04000,
GN   ECO:0000313|EMBL:AAU11448.1};
OS   Trichechus manatus papillomavirus 1.
OC   Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes;
OC   Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae;
OC   Rhopapillomavirus; Rhopapillomavirus 1.
OX   NCBI_TaxID=291589 {ECO:0000313|EMBL:AAU11448.1, ECO:0000313|Proteomes:UP000052099};
RN   [1] {ECO:0000313|EMBL:AAU11448.1, ECO:0000313|Proteomes:UP000052099}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15507660; DOI=10.1128/JVI.78.22.12698-12702.2004;
RA   Rector A., Bossart G.D., Ghim S.-J., Sundberg J.P., Jenson A.B.,
RA   Van Ranst M.;
RT   "Characterization of a novel close-to-root papillomavirus from a Florida
RT   manatee by using multiply primed rolling-circle amplification: Trichechus
RT   manatus latirostris papillomavirus type 1.";
RL   J. Virol. 78:12698-12702(2004).
CC   -!- FUNCTION: ATP-dependent DNA helicase required for initiation of viral
CC       DNA replication. It forms a complex with the viral E2 protein. The E1-
CC       E2 complex binds to the replication origin which contains binding sites
CC       for both proteins. During the initial step, a dimer of E1 interacts
CC       with a dimer of protein E2 leading to a complex that binds the viral
CC       origin of replication with high specificity. Then, a second dimer of E1
CC       displaces the E2 dimer in an ATP-dependent manner to form the E1
CC       tetramer. Following this, two E1 monomers are added to each half of the
CC       site, which results in the formation of two E1 trimers on the viral
CC       ori. Subsequently, two hexamers will be created. The double hexamer
CC       acts as a bi-directional helicase machinery and unwinds the viral DNA
CC       and then recruits the host DNA polymerase to start replication.
CC       {ECO:0000256|HAMAP-Rule:MF_04000}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC         Evidence={ECO:0000256|HAMAP-Rule:MF_04000,
CC         ECO:0000256|PIRNR:PIRNR003383};
CC   -!- SUBUNIT: Can form hexamers. Interacts with E2 protein; this interaction
CC       increases E1 DNA binding specificity. Interacts with host DNA
CC       polymerase subunit POLA2. Interacts with host single stranded DNA-
CC       binding protein RPA1. Interacts with host TOP1; this interaction
CC       stimulates the enzymatic activity of TOP1. {ECO:0000256|HAMAP-
CC       Rule:MF_04000}.
CC   -!- SUBCELLULAR LOCATION: Host nucleus {ECO:0000256|ARBA:ARBA00004147,
CC       ECO:0000256|HAMAP-Rule:MF_04000}. Nucleus
CC       {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- PTM: Phosphorylated. {ECO:0000256|HAMAP-Rule:MF_04000}.
CC   -!- PTM: Sumoylated. {ECO:0000256|HAMAP-Rule:MF_04000}.
CC   -!- SIMILARITY: Belongs to the papillomaviridae E1 protein family.
CC       {ECO:0000256|HAMAP-Rule:MF_04000, ECO:0000256|PIRNR:PIRNR003383}.
CC   -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC       feature annotation. {ECO:0000256|HAMAP-Rule:MF_04000}.
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DR   EMBL; AY609301; AAU11448.1; -; Genomic_DNA.
DR   RefSeq; YP_164623.1; NC_006563.1.
DR   GeneID; 3197251; -.
DR   KEGG; vg:3197251; -.
DR   OrthoDB; 4795at10239; -.
DR   Proteomes; UP000052099; Segment.
DR   GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:RHEA.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003678; F:DNA helicase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.40.1310.10; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 1.10.10.510; Zinc finger, large T-antigen D1 domain; 1.
DR   HAMAP; MF_04000; PPV_E1; 1.
DR   InterPro; IPR014015; Helicase_SF3_DNA-vir.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001177; PPV_DNA_helicase_E1_C.
DR   InterPro; IPR014000; PPV_DNA_helicase_E1_N.
DR   InterPro; IPR046832; PPV_E1_DBD.
DR   InterPro; IPR046935; PPV_E1_DBD_sf.
DR   InterPro; IPR016393; Rep_E1_papillomaV.
DR   InterPro; IPR037102; Znf_lg_T-Ag_D1_dom_sf.
DR   Pfam; PF00519; PPV_E1_C; 1.
DR   Pfam; PF20450; PPV_E1_DBD; 1.
DR   Pfam; PF00524; PPV_E1_N; 1.
DR   PIRSF; PIRSF003383; Rep_E1_papillomaV; 1.
DR   SUPFAM; SSF55464; Origin of replication-binding domain, RBD-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS51206; SF3_HELICASE_1; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   DNA replication {ECO:0000256|ARBA:ARBA00022705, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   Early protein {ECO:0000256|ARBA:ARBA00022518, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000256|HAMAP-Rule:MF_04000};
KW   Host nucleus {ECO:0000256|ARBA:ARBA00022562, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_04000};
KW   Isopeptide bond {ECO:0000256|HAMAP-Rule:MF_04000};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW   Rule:MF_04000};
KW   Phosphoprotein {ECO:0000256|ARBA:ARBA00022553, ECO:0000256|HAMAP-
KW   Rule:MF_04000}; Reference proteome {ECO:0000313|Proteomes:UP000052099};
KW   Ubl conjugation {ECO:0000256|HAMAP-Rule:MF_04000}.
FT   DOMAIN          415..565
FT                   /note="SF3 helicase"
FT                   /evidence="ECO:0000259|PROSITE:PS51206"
FT   REGION          1..40
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          55..97
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          588..611
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        17..35
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         441..448
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_04000"
FT   MOD_RES         86
FT                   /note="Phosphoserine; by host"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_04000"
FT   CROSSLNK        522
FT                   /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with
FT                   G-Cter in SUMO)"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_04000"
SQ   SEQUENCE   611 AA;  69594 MW;  39367935A54C3A06 CRC64;
     MTDKSGEYFL LQEAECSDSD TTDEEIVEEN SENGVDFIDD GVCTQGNTLA EYNRKEADRH
     KRDLEQLKRR HVRRPKLKDS EGVGGSPSSI SDYSDSQSSK RRCLRGLEND SGILLSQQDE
     VTNSYETGNV QVELPGGGQG TSENLENIAP VGRGRAPEEL LRSANRQATF LGKFKDTYGI
     SFTELTRPFK SDKTCCEDWV AALYGISGPL YEGAKQLLEG HVIYMQLTLG TTANGLLLLM
     LLRLKHAKSR ATLRRLLQNI FNISEMQLLA EPPKTRSVPV ALFWYKGTLS SLSYNFGTCP
     EWIHRQTLIN HQSMDELKFD LSSMIQWAYD YDYDDECTIA YQYARLAETD ANANAWLNSP
     AQARYVKDTA TMVKYYKRAQ MREMTMGEWI KHRLEKIDEE GDWKKIVQFI RFQGIEFPLF
     FGALKKFLHG IPKHNCIVIW GPPDTGKSMF CMNLIKLLGG KIISFANSKS QFWLQPLADA
     KVGLLDDATG VCWDYIDQYL RNALDGNPIS IDLKHRAPTQ MKCPPLLITT NLDITANSRW
     RYLVSRVACF KFSEPFPFTD RDTPTYPLTE CNWKALLERL WKQLDFPEQE EEDGSTTRPF
     KCGAKQNTGL I
//
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