ID RH39_ORYSJ Reviewed; 625 AA.
AC Q5VRY0;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 07-DEC-2004, sequence version 1.
DT 29-MAY-2013, entry version 64.
DE RecName: Full=DEAD-box ATP-dependent RNA helicase 39;
DE EC=3.6.4.13;
GN OrderedLocusNames=Os01g0184500, LOC_Os01g08930; ORFNames=P0510F03.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC Ehrhartoideae; Oryzeae; Oryza.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M.,
RA Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C.,
RA Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M.,
RA Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
RA Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I.,
RA Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y.,
RA Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M.,
RA Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K.,
RA Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y.,
RA Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
CC -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC box family of RNA helicases and controls ATP binding and
CC hydrolysis.
CC -!- SIMILARITY: Belongs to the DEAD box helicase family.
CC -!- SIMILARITY: Contains 1 helicase ATP-binding domain.
CC -!- SIMILARITY: Contains 1 helicase C-terminal domain.
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DR EMBL; AP002486; BAD67795.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04148.1; -; Genomic_DNA.
DR EMBL; AK060699; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001042234.1; NM_001048769.1.
DR UniGene; Os.3774; -.
DR ProteinModelPortal; Q5VRY0; -.
DR PRIDE; Q5VRY0; -.
DR EnsemblPlants; LOC_Os01g08930.1; LOC_Os01g08930.1; LOC_Os01g08930.
DR GeneID; 4325344; -.
DR KEGG; osa:4325344; -.
DR Gramene; Q5VRY0; -.
DR eggNOG; COG0513; -.
DR HOGENOM; HOG000264923; -.
DR OMA; FRSTMVS; -.
DR ProtClustDB; CLSN2690824; -.
DR ArrayExpress; Q5VRY0; -.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants/Gramene.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
DR GO; GO:0070180; F:LSU rRNA binding; IEA:EnsemblPlants/Gramene.
DR GO; GO:0006200; P:ATP catabolic process; IEA:GOC.
DR GO; GO:0080158; P:chloroplast ribulose bisphosphate carboxylase complex biogenesis; IEA:EnsemblPlants/Gramene.
DR InterPro; IPR011545; DNA/RNA_helicase_DEAD/DEAH_N.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; FALSE_NEG.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Complete proteome; Helicase; Hydrolase;
KW Nucleotide-binding; Reference proteome; RNA-binding.
FT CHAIN 1 625 DEAD-box ATP-dependent RNA helicase 39.
FT /FTId=PRO_0000282515.
FT DOMAIN 141 328 Helicase ATP-binding.
FT DOMAIN 353 503 Helicase C-terminal.
FT NP_BIND 154 161 ATP (By similarity).
FT MOTIF 110 138 Q motif.
FT MOTIF 268 271 DEAD box.
FT COMPBIAS 31 37 Poly-Thr.
FT COMPBIAS 89 96 Poly-Gly.
FT CONFLICT 319 319 D -> G (in Ref. 4; AK060699).
SQ SEQUENCE 625 AA; 67860 MW; AE71A3E2CBAAD320 CRC64;
MAMAGAAGRC LMLTRPSPLL RLRLLRAALA TTTTTTTAAG ASAVTAPTEP ETTAREAPSR
HELLLERLRQ RHLKGVPAAT PRPAQREKGR GGGGGGAQEL QQKRRVEVVD SFEELGLGEE
VMAALGEMGI SKPTEIQCVG VPAVLAGTSV VLGSHTGSGK TLAYLLPLVQ LLRRDEAMLG
MSMKPRRPRA VVLCPTRELT EQVFRVAKSI SHHARFRSTM VSGGSRIRPQ EDSLNMPVDM
VVGTPGRILD HIKDGNMVYG DIKYLVLDEA DTMFDQGFGP DIRKFLAPLK NRAAKPGDQG
FQTVLVTATM TKAVQKLIDE EFEGIVHLRT TTFQKRVATA RHDFIKLSGS ENKLEALLQV
LEPSLAKGNK VMVFCNTLNS SRAVDHFLTE NQISTVNYHG EVPAEERVEN LNKFRNEEGD
CPTLVCTDLA ARGLDLDVDH VIMFDFPSNS IDYLHRTGRT ARMGAKGKVT SLVAKKDVTL
ATRIEEAMKK NESLEALTTN NVRRAAVNPQ YTSTKGRPSA LKVVNQKGRR GVALQTKSSR
IVKDTTSSRR RSPIRSQPRS KSTSSGKAKP VRSAKPSKSS SPSPKVAKSR PRPEGRKGDA
LNKLGSKLSV VGFRGRSSGK SAQAS
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