ID Q6DEX5_XENTR Unreviewed; 325 AA.
AC Q6DEX5;
DT 16-AUG-2004, integrated into UniProtKB/TrEMBL.
DT 16-AUG-2004, sequence version 1.
DT 27-MAR-2024, entry version 123.
DE SubName: Full=PHD finger protein 13 {ECO:0000313|EMBL:AAH76968.1, ECO:0000313|Ensembl:ENSXETP00000024365};
GN Name=phf13 {ECO:0000313|EMBL:AAH76968.1,
GN ECO:0000313|Ensembl:ENSXETP00000024365,
GN ECO:0000313|RefSeq:NP_001006861.1,
GN ECO:0000313|Xenbase:XB-GENE-951412};
OS Xenopus tropicalis (Western clawed frog) (Silurana tropicalis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
OX NCBI_TaxID=8364 {ECO:0000313|EMBL:AAH76968.1};
RN [1] {ECO:0000313|RefSeq:NP_001006861.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12454917; DOI=10.1002/dvdy.10174;
RA Klein S.L., Strausberg R.L., Wagner L., Pontius J., Clifton S.W.,
RA Richardson P.;
RT "Genetic and genomic tools for Xenopus research: The NIH Xenopus
RT initiative.";
RL Dev. Dyn. 225:384-391(2002).
RN [2] {ECO:0000313|EMBL:AAH76968.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Embryo {ECO:0000313|EMBL:AAH76968.1};
RG NIH - Xenopus Gene Collection (XGC) project;
RL Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Ensembl:ENSXETP00000024365}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Nigerian {ECO:0000313|Ensembl:ENSXETP00000024365};
RX PubMed=20431018; DOI=10.1126/science.1183670;
RA Hellsten U., Harland R.M., Gilchrist M.J., Hendrix D., Jurka J.,
RA Kapitonov V., Ovcharenko I., Putnam N.H., Shu S., Taher L., Blitz I.L.,
RA Blumberg B., Dichmann D.S., Dubchak I., Amaya E., Detter J.C., Fletcher R.,
RA Gerhard D.S., Goodstein D., Graves T., Grigoriev I.V., Grimwood J.,
RA Kawashima T., Lindquist E., Lucas S.M., Mead P.E., Mitros T., Ogino H.,
RA Ohta Y., Poliakov A.V., Pollet N., Robert J., Salamov A., Sater A.K.,
RA Schmutz J., Terry A., Vize P.D., Warren W.C., Wells D., Wills A.,
RA Wilson R.K., Zimmerman L.B., Zorn A.M., Grainger R., Grammer T.,
RA Khokha M.K., Richardson P.M., Rokhsar D.S.;
RT "The genome of the Western clawed frog Xenopus tropicalis.";
RL Science 328:633-636(2010).
RN [4] {ECO:0000313|Ensembl:ENSXETP00000024365}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUN-2011) to UniProtKB.
RN [5] {ECO:0000313|RefSeq:NP_001006861.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; BC076968; AAH76968.1; -; mRNA.
DR RefSeq; NP_001006861.1; NM_001006860.1.
DR RefSeq; XP_012821895.1; XM_012966441.2.
DR PaxDb; 8364-ENSXETP00000024365; -.
DR DNASU; 394704; -.
DR DNASU; 448626; -.
DR Ensembl; ENSXETT00000024365; ENSXETP00000024365; ENSXETG00000011141.
DR GeneID; 448626; -.
DR KEGG; xtr:448626; -.
DR AGR; Xenbase:XB-GENE-951412; -.
DR CTD; 148479; -.
DR Xenbase; XB-GENE-951412; phf13.
DR eggNOG; KOG1844; Eukaryota.
DR HOGENOM; CLU_047981_0_0_1; -.
DR OrthoDB; 455444at2759; -.
DR TreeFam; TF331373; -.
DR Proteomes; UP000008143; Chromosome 7.
DR Bgee; ENSXETG00000011141; Expressed in 4-cell stage embryo and 12 other cell types or tissues.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15632; PHD_PHF13; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR041947; PHD_PHF13.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR14571:SF13; PHD FINGER PROTEIN 13; 1.
DR PANTHER; PTHR14571; UNCHARACTERIZED; 1.
DR Pfam; PF20826; PHD_5; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
PE 2: Evidence at transcript level;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008143};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 259..303
FT /note="Zinc finger PHD-type"
FT /evidence="ECO:0000259|SMART:SM00249"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 46..86
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 51..75
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 325 AA; 37423 MW; 6871C65A7DDC2D00 CRC64;
MDTASTSTFD SEDGTPNYRR RRTVEDFNKF CTFVLAYAGY IPYPEEETPL RASSSPPNST
GSTVDSDSWD SRYQDLPSSD ALPIKKRRSF SDLKHERSFP TVLKRSKLSS FLLDRKKIDK
IKKKKKLKKK ELELEGIKQE VEPVKPIIKQ EPVETPIEET TPISPIAPFP DDHLELKKSP
PHEIQEPVLE DPSTSMDCPS VSMSYEDTED IKTEYSEVNL GKRTVIRQGK QVVFRDEDST
GNDEDIMVDS DDESWHLVTC FCMKPFAGRP MIECNECNTW IHLSCAKIRK SNVPEIYVCQ
KCRDTKFDIR RSNRSRMGCR KLFLD
//
