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Database: UniProt
Entry: Q6H8D5
LinkDB: Q6H8D5
Original site: Q6H8D5 
ID   COB22_ORYSJ             Reviewed;         910 AA.
AC   Q6H8D5; Q0E2W0;
DT   01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT   19-JUL-2004, sequence version 1.
DT   29-OCT-2014, entry version 79.
DE   RecName: Full=Coatomer subunit beta'-2;
DE   AltName: Full=Beta'-coat protein 2;
DE            Short=Beta'-COP 2;
GN   OrderedLocusNames=Os02g0209100, LOC_Os02g11840;
GN   ORFNames=OJ1006_A02.24;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC   Ehrhartoideae; Oryzeae; Oryza.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 290-910.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: The coatomer is a cytosolic protein complex that binds
CC       to dilysine motifs and reversibly associates with Golgi non-
CC       clathrin-coated vesicles, which further mediate biosynthetic
CC       protein transport from the ER, via the Golgi up to the trans Golgi
CC       network. Coatomer complex is required for budding from Golgi
CC       membranes, and is essential for the retrograde Golgi-to-ER
CC       transport of dilysine-tagged proteins (By similarity).
CC       {ECO:0000250}.
CC   -!- SUBUNIT: Oligomeric complex that consists of at least the alpha,
CC       beta, beta', gamma, delta, epsilon and zeta subunits.
CC       {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Golgi apparatus
CC       membrane {ECO:0000250}; Peripheral membrane protein {ECO:0000250};
CC       Cytoplasmic side {ECO:0000250}. Cytoplasmic vesicle, COPI-coated
CC       vesicle membrane {ECO:0000250}; Peripheral membrane protein
CC       {ECO:0000250}; Cytoplasmic side {ECO:0000250}. Note=The coatomer
CC       is cytoplasmic or polymerized on the cytoplasmic side of the
CC       Golgi, as well as on the vesicles/buds originating from it.
CC       {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the WD repeat COPB2 family. {ECO:0000305}.
CC   -!- SIMILARITY: Contains 9 WD repeats. {ECO:0000255|PROSITE-
CC       ProRule:PRU00221}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK099955; Type=Frameshift; Positions=407; Evidence={ECO:0000305};
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DR   EMBL; AP003977; BAD25014.1; -; Genomic_DNA.
DR   EMBL; AP008208; BAF08178.1; -; Genomic_DNA.
DR   EMBL; AK099955; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; NP_001046264.1; NM_001052799.1.
DR   UniGene; Os.58005; -.
DR   ProteinModelPortal; Q6H8D5; -.
DR   STRING; 39947.LOC_Os02g11840.1; -.
DR   PRIDE; Q6H8D5; -.
DR   GeneID; 4328694; -.
DR   KEGG; osa:4328694; -.
DR   Gramene; Q6H8D5; -.
DR   eggNOG; COG2319; -.
DR   HOGENOM; HOG000163444; -.
DR   InParanoid; Q6H8D5; -.
DR   GO; GO:0031410; C:cytoplasmic vesicle; IEA:UniProtKB-KW.
DR   GO; GO:0005794; C:Golgi apparatus; IEA:UniProtKB-KW.
DR   GO; GO:0030117; C:membrane coat; IEA:InterPro.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR   GO; GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
DR   Gene3D; 1.25.40.10; -; 1.
DR   Gene3D; 2.130.10.10; -; 2.
DR   InterPro; IPR006692; Coatomer_WD-assoc_reg.
DR   InterPro; IPR016453; COPB2.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR011048; Haem_d1.
DR   InterPro; IPR011990; TPR-like_helical_dom.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
DR   InterPro; IPR001680; WD40_repeat.
DR   InterPro; IPR017986; WD40_repeat_dom.
DR   Pfam; PF04053; Coatomer_WDAD; 1.
DR   Pfam; PF00400; WD40; 4.
DR   PIRSF; PIRSF005567; Coatomer_beta'_subunit; 1.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 6.
DR   SUPFAM; SSF50978; SSF50978; 1.
DR   SUPFAM; SSF51004; SSF51004; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 5.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE   2: Evidence at transcript level;
KW   Complete proteome; Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport;
KW   Golgi apparatus; Membrane; Protein transport; Reference proteome;
KW   Repeat; Transport; WD repeat.
FT   CHAIN         1    910       Coatomer subunit beta'-2.
FT                                /FTId=PRO_0000285608.
FT   REPEAT       13     52       WD 1.
FT   REPEAT       55     94       WD 2.
FT   REPEAT       97    136       WD 3.
FT   REPEAT      140    180       WD 4.
FT   REPEAT      183    224       WD 5.
FT   REPEAT      227    266       WD 6.
FT   REPEAT      269    309       WD 7.
FT   REPEAT      351    393       WD 8.
FT   REPEAT      461    501       WD 9.
SQ   SEQUENCE   910 AA;  102678 MW;  FBA6B1BCE750C481 CRC64;
     MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWNYQTQTMV KSFEVTELPV
     RSSKFIARKQ WIVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD
     MLIKLWDWDK GWMCTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTVKVW SLGSPDPNFT
     LDGHSKGVNC VDYFTGGDRP YLITGSDDQT AKVWDYQTKS CVQTLEGHAH NVSAVCFHPE
     LPITLTGSED GTVRLWHSTT YRLENTLNYG LERVWALGYM KGSRRVVIGY DEGTIMIKIG
     REVPVASMDS SGKIIWSKHN EIQTVNIKTI GADNEIADGE RLPLAVKELG TCDLYPQSLR
     HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SALEFVWSVD GEYAVRESTS RIKIYSKNFQ
     ERKSIRPPFS AERIFGGVLL AMCTNDFICF HDWAEGRMIR RIDVNVKNLY WADSGDLVTI
     ASDTSFYILK YNRDVVSSHL DGGGSVGEEG VEDAFELLHE INERIRTGLW VGDCFIYNNS
     SSRLNYCVGG EVTTLFHLDR QMYLLGYLAN QSRVYLIDKQ FNVVGYTLLL TMIEYKTLVM
     RGDFDRANAL LPSIPKEQHD SVARFLESQG MLEEALEIAT DSNYRFDLAV QLGRLEVAKA
     IAIEAQSESK WRQLGELAMS TGKLDMAEEC LLHAMDLSGL LLLYSSLGDA EGLTKLTSMA
     KEQGKNNVAF LCFFMLGKLE ECLQLLIESN RIPEAALMSR SYLPSKVPEI VTLWKKDLQK
     VNPKAAESLA DPDEYPNLFE DWQIALNVEA NVAPKRGIYP PAEEYIIHAE RPNETLVEAF
     KSMHIHLEEV LPDENGDDTH EAIEENGVEE SQEDAVEVDV EADGSTDGAV LVNGNDTEEQ
     WGTNNEESSA
//
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