ID COB22_ORYSJ Reviewed; 910 AA.
AC Q6H8D5; Q0E2W0;
DT 01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
DT 19-JUL-2004, sequence version 1.
DT 01-MAY-2013, entry version 70.
DE RecName: Full=Coatomer subunit beta'-2;
DE AltName: Full=Beta'-coat protein 2;
DE Short=Beta'-COP 2;
GN OrderedLocusNames=Os02g0209100, LOC_Os02g11840;
GN ORFNames=OJ1006_A02.24;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade;
OC Ehrhartoideae; Oryzeae; Oryza.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 290-910.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: The coatomer is a cytosolic protein complex that binds
CC to dilysine motifs and reversibly associates with Golgi non-
CC clathrin-coated vesicles, which further mediate biosynthetic
CC protein transport from the ER, via the Golgi up to the trans Golgi
CC network. Coatomer complex is required for budding from Golgi
CC membranes, and is essential for the retrograde Golgi-to-ER
CC transport of dilysine-tagged proteins (By similarity).
CC -!- SUBUNIT: Oligomeric complex that consists of at least the alpha,
CC beta, beta', gamma, delta, epsilon and zeta subunits (By
CC similarity).
CC -!- SUBCELLULAR LOCATION: Cytoplasm (By similarity). Golgi apparatus
CC membrane; Peripheral membrane protein; Cytoplasmic side (By
CC similarity). Cytoplasmic vesicle, COPI-coated vesicle membrane;
CC Peripheral membrane protein; Cytoplasmic side (By similarity).
CC Note=The coatomer is cytoplasmic or polymerized on the cytoplasmic
CC side of the Golgi, as well as on the vesicles/buds originating
CC from it (By similarity).
CC -!- SIMILARITY: Belongs to the WD repeat COPB2 family.
CC -!- SIMILARITY: Contains 9 WD repeats.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK099955; Type=Frameshift; Positions=407;
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DR EMBL; AP003977; BAD25014.1; -; Genomic_DNA.
DR EMBL; AP008208; BAF08178.1; -; Genomic_DNA.
DR EMBL; AK099955; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_001046264.1; NM_001052799.1.
DR UniGene; Os.58005; -.
DR HSSP; P63005; 1VYH.
DR ProteinModelPortal; Q6H8D5; -.
DR GeneID; 4328694; -.
DR KEGG; osa:4328694; -.
DR Gramene; Q6H8D5; -.
DR eggNOG; COG2319; -.
DR HOGENOM; HOG000163444; -.
DR ArrayExpress; Q6H8D5; -.
DR GO; GO:0030663; C:COPI-coated vesicle membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0030117; C:membrane coat; IEA:InterPro.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
DR GO; GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; -; 1.
DR Gene3D; 2.130.10.10; -; 2.
DR InterPro; IPR006692; Coatomer_WD-assoc_reg.
DR InterPro; IPR016453; COPB2.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR011990; TPR-like_helical.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR017986; WD40_repeat_dom.
DR Pfam; PF04053; Coatomer_WDAD; 1.
DR Pfam; PF00400; WD40; 4.
DR PIRSF; PIRSF005567; Coatomer_beta'_subunit; 1.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SUPFAM; SSF50978; WD40_like; 2.
DR PROSITE; PS00678; WD_REPEATS_1; FALSE_NEG.
DR PROSITE; PS50082; WD_REPEATS_2; 5.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 2: Evidence at transcript level;
KW Complete proteome; Cytoplasm; Cytoplasmic vesicle; ER-Golgi transport;
KW Golgi apparatus; Membrane; Protein transport; Reference proteome;
KW Repeat; Transport; WD repeat.
FT CHAIN 1 910 Coatomer subunit beta'-2.
FT /FTId=PRO_0000285608.
FT REPEAT 13 52 WD 1.
FT REPEAT 55 94 WD 2.
FT REPEAT 97 136 WD 3.
FT REPEAT 140 180 WD 4.
FT REPEAT 183 224 WD 5.
FT REPEAT 227 266 WD 6.
FT REPEAT 269 309 WD 7.
FT REPEAT 351 393 WD 8.
FT REPEAT 461 501 WD 9.
SQ SEQUENCE 910 AA; 102678 MW; FBA6B1BCE750C481 CRC64;
MPLRLDIKRK LAQRSERVKS VDLHPTEPWI LSSLYSGSVC IWNYQTQTMV KSFEVTELPV
RSSKFIARKQ WIVAGADDMF IRVYNYNTMD KVKVFEAHTD YIRCVAVHPT QPFVLSSSDD
MLIKLWDWDK GWMCTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTVKVW SLGSPDPNFT
LDGHSKGVNC VDYFTGGDRP YLITGSDDQT AKVWDYQTKS CVQTLEGHAH NVSAVCFHPE
LPITLTGSED GTVRLWHSTT YRLENTLNYG LERVWALGYM KGSRRVVIGY DEGTIMIKIG
REVPVASMDS SGKIIWSKHN EIQTVNIKTI GADNEIADGE RLPLAVKELG TCDLYPQSLR
HNPNGRFVVV CGDGEYIIYT ALAWRNRSFG SALEFVWSVD GEYAVRESTS RIKIYSKNFQ
ERKSIRPPFS AERIFGGVLL AMCTNDFICF HDWAEGRMIR RIDVNVKNLY WADSGDLVTI
ASDTSFYILK YNRDVVSSHL DGGGSVGEEG VEDAFELLHE INERIRTGLW VGDCFIYNNS
SSRLNYCVGG EVTTLFHLDR QMYLLGYLAN QSRVYLIDKQ FNVVGYTLLL TMIEYKTLVM
RGDFDRANAL LPSIPKEQHD SVARFLESQG MLEEALEIAT DSNYRFDLAV QLGRLEVAKA
IAIEAQSESK WRQLGELAMS TGKLDMAEEC LLHAMDLSGL LLLYSSLGDA EGLTKLTSMA
KEQGKNNVAF LCFFMLGKLE ECLQLLIESN RIPEAALMSR SYLPSKVPEI VTLWKKDLQK
VNPKAAESLA DPDEYPNLFE DWQIALNVEA NVAPKRGIYP PAEEYIIHAE RPNETLVEAF
KSMHIHLEEV LPDENGDDTH EAIEENGVEE SQEDAVEVDV EADGSTDGAV LVNGNDTEEQ
WGTNNEESSA
//
