ID   Q6L420_SOLDE            Unreviewed;      1504 AA.
AC   Q6L420;
DT   05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT   03-OCT-2006, sequence version 2.
DT   27-MAR-2024, entry version 78.
DE   SubName: Full=Polyprotein, putative {ECO:0000313|EMBL:AAT39963.2};
GN   ORFNames=SDM1_29t00004 {ECO:0000313|EMBL:AAT39963.2};
OS   Solanum demissum (Wild potato).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum.
OX   NCBI_TaxID=50514 {ECO:0000313|EMBL:AAT39963.2};
RN   [1] {ECO:0000313|EMBL:AAT39963.2}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R., Liu J., Childs K., Zaborsky J., Tallon L., Wirtz U., Wei F.,
RA   Kuang H., Zhang P., Marano M., Baker B.;
RL   Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:AAT39963.2}
RP   NUCLEOTIDE SEQUENCE.
RA   Ronning C.M.;
RL   Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:AAT39963.2}
RP   NUCLEOTIDE SEQUENCE.
RA   Buell R.;
RL   Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:AAT39963.2}
RP   NUCLEOTIDE SEQUENCE.
RA   Childs K.;
RL   Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; AC146506; AAT39963.2; -; Genomic_DNA.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09279; RNase_HI_like; 1.
DR   CDD; cd01647; RT_LTR; 1.
DR   Gene3D; 3.30.70.270; -; 2.
DR   Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR041577; RT_RNaseH_2.
DR   PANTHER; PTHR24559:SF437; RIBONUCLEASE H; 1.
DR   PANTHER; PTHR24559; TRANSPOSON TY3-I GAG-POL POLYPROTEIN; 1.
DR   Pfam; PF17919; RT_RNaseH_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT   DOMAIN          599..781
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
FT   DOMAIN          1250..1368
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
SQ   SEQUENCE   1504 AA;  172078 MW;  165C1670C08472AD CRC64;
     MNDHEEVAVP YKPILKDETG IESSANVVDL TKMMPSGAES TSEKLTPSSA PILTVKGALE
     DVWASQREAR LASVPLPMTN PKAVPWKYEP TVVTYKGKEI NEKVDEIEGM TRSRRCYAPA
     ELRKNNNDQM QVKSPVTERE AEEFLRKMKL SDYSIVEQLR KTPAQISLLS LLIHSDEHRK
     VVMKILNEAH VPNEGTMSQL EKIAGRIFEV NCITFSDDEL PVEDAIGEIE LILKIGPVDF
     TVNFQVLNIN ASYNLLLGRP WVHRAGAVPS TLHQMVKFEY DRQEVIVHCE RDLSVYKDSS
     LPFIKANNEN EALVYQAFEV VVVEHNLEGN LISKPQLPMA SVMMVNEMLK HGFKLGKGLG
     IFLQGRAYPV SPRKSLGTFG LGYKPRVEDK MKAKKQRRDV WSLTKPIPPI YKSFNKARTI
     ESSKSLLPEP VLEVHEELIN YFQDLFVEAD MIELEEGTSD RDVQFIGPDV QLNNWEATPL
     PIKNESCSFY ADSSDMTCIQ NYSPDLKIQS NLRPNPEILS QEIEYDEDEV FEEEDKIQAL
     LDYKDVFASS YDDMPGLSTD MVVHKLPIDP KFPPVKKKLR KLKTDMSVII KEEITKQLEA
     KVIRVAQYPS WLANIVPVPK KDGKVRMCVD CRDLNKASPK DDFPLPNSHI LLDNCAEHEI
     ASFVDCYAGY HQIIMDDEDA EKMSFITPWG TYCYRVMPFG LKNAGATYMR AMTTMFHDMM
     HKEIEVYVDD VIIKSKKQSN HVQDLRRFFE RLRRYNLKLN PAKCVFGVLS GELLGFIGSR
     RGIELDPLKI KAIHELPPPK NKTEVMSFLG RLNYISRFIA QLTTTCEPIF KLLKKNATVE
     WTEECREAFE RIKNYLLNPP VLVPPEPGRP LILYMSVLDN SFGCVLGQHD GTGKKEHAIY
     YLSKKFTVYE SKYTLLERTC CALTWVAQKL KHYLSSYTTY LISRMDPLKY IFQKPMPTGR
     LAKWQILLTE FDIIYVTRTA MKAQALADHL AENPIDDEYE PLKTYFPDEE VSCIDEVIHN
     KDQGWKLFFD AQLRFYCTNN MSEYEACILG LRLAADMGIQ KLLVLGDSDL LVHQIQGEWE
     TRDPKLIPYQ HCLQDLCQQF VSIKFRHIPR VHNEIVDALA TLSSMLQHPD EAHIDPLYIQ
     IRDQNAYCNL VEEEFDGKPW FHDIKTYLQS GECPTNATSN QKRTIRRLDS GFFLSGGILY
     KKTPDLGLLR CVNAKEASTI MIEVHSGICG PHMNGYVLAK KILRAVTCDV CSMAFRGWGM
     DVIGPIEPKA SNGHRFILVA IEYFTKWVEA VTFKSVTKKV VVDFIHFNII CRFGIPKAIV
     TDNAVNLNSH LMQEVCRQFK IEHRNSTPYR PKENGAVEAA NKNIKRYFVY GTEAVLPAEV
     EIPSLRIVVE AGIDDDEWVR TCLKQLSLID EKRMTSVCHG QLYQKRMAQA YNKKVRPRRF
     EEGQLVLRRI LPHQAEVKGK FSPNWKGPFI VKKVLSNGAL YLADIEGKMT EMVINADAVK
     RYYI
//