ID Q6N929_RHOPA Unreviewed; 305 AA.
AC Q6N929;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 126.
DE SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:CAE27162.1};
GN OrderedLocusNames=RPA1721 {ECO:0000313|EMBL:CAE27162.1};
OS Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Rhodopseudomonas.
OX NCBI_TaxID=258594 {ECO:0000313|EMBL:CAE27162.1, ECO:0000313|Proteomes:UP000001426};
RN [1] {ECO:0000313|EMBL:CAE27162.1, ECO:0000313|Proteomes:UP000001426}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-98 / CGA009 {ECO:0000313|Proteomes:UP000001426};
RX PubMed=14704707; DOI=10.1038/nbt923;
RA Larimer F.W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L.,
RA Land M.L., Pelletier D.A., Beatty T.J., Lang A.S., Tabita F.R.,
RA Gibson J.L., Hanson T.E., Torres y Torres J., Peres C., Harrison F.H.,
RA Gibson J., Harwood C.S.;
RT "Complete genome sequence of the metabolically versatile photosynthetic
RT bacterium Rhodopseudomonas palustris.";
RL Nat. Biotechnol. 22:55-61(2004).
CC -!- FUNCTION: NodD regulates the expression of the nodABCFE genes which
CC encode other nodulation proteins. NodD is also a negative regulator of
CC its own expression. Binds flavonoids as inducers.
CC {ECO:0000256|ARBA:ARBA00003502}.
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
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DR EMBL; BX572598; CAE27162.1; -; Genomic_DNA.
DR RefSeq; WP_011157448.1; NZ_CP116810.1.
DR AlphaFoldDB; Q6N929; -.
DR STRING; 258594.RPA1721; -.
DR GeneID; 66892757; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_16_2_5; -.
DR PhylomeDB; Q6N929; -.
DR Proteomes; UP000001426; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd08471; PBP2_CrgA_like_2; 1.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30537:SF5; HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TTDR-RELATED; 1.
DR PANTHER; PTHR30537; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Reference proteome {ECO:0000313|Proteomes:UP000001426}.
FT DOMAIN 1..59
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 305 AA; 32690 MW; DA6703E8E2E8B910 CRC64;
MDRLDTMTAF VAVADLQGFA PAARKLGLSP SAVTRMVAAL EERLGTRLLQ RTTRSVALTD
TGARYLERMR RILADIEEAD TSAAAERVTP SGRLVVSAPV GFGRRHVAPL LSDYLRRYPE
VTGELRLSDL MINLVEDGVD CAVRIGHLSD SSLVARQLGA MRRIVVASPA YLAARGVPAM
PAEIATHDVI HFGQTGAPVG WHFVVDGRDV RIACTPRLVS NVADVAILDA ERGGGLTRVL
AYQAADAIAA GRLQIVLANY EVPPLPIAIV YPTSRLLSAK VRAFIDLAAE TSDWRFGGDG
KRSGA
//
