ID Q6NLH0_ARATH Unreviewed; 114 AA.
AC Q6NLH0;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 29-MAY-2013, entry version 71.
DE RecName: Full=DNA-directed RNA polymerase subunit;
GN Name=NRPB9A; OrderedLocusNames=AT3G16980, At3g16980;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE.
RX PubMed=11130713; DOI=10.1038/35048706;
RG European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG Institute for Genomic Research;
RG Kazusa DNA Research Institute;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
RA Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B.,
RA Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
RA De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
RA Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
RA Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E.,
RA Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H.,
RA Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M.,
RA Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K.,
RA Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M.,
RA Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C.,
RA Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M.,
RA Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C.,
RA Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A.,
RA flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H.,
RA Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D.,
RA Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A.,
RA Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R.,
RA Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P.,
RA Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T.,
RA Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T.,
RA Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N.,
RA Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M.,
RA Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis
RT thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE.
RA Kim C.J., Chen H., Cheuk R., Shinn P., Ecker J.R.;
RT "Arabidopsis cDNA clones.";
RL Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Chen H., Cheuk R., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE.
RG Arabidopsis TAIR10 Release;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Resource (TAIR);
RL Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription
CC of DNA into RNA using the four ribonucleoside triphosphates as
CC substrates (By similarity).
CC -!- SUBCELLULAR LOCATION: Nucleus (By similarity).
CC -!- SIMILARITY: Belongs to the archaeal rpoM/eukaryotic
CC RPA12/RPB9/RPC11 RNA polymerase family.
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DR EMBL; BT012109; AAS76204.1; -; mRNA.
DR EMBL; BT012363; AAS88753.1; -; mRNA.
DR EMBL; CP002686; AEE75891.1; -; Genomic_DNA.
DR IPI; IPI00532819; -.
DR RefSeq; NP_188323.1; NM_112574.2.
DR UniGene; At.73939; -.
DR SMR; Q6NLH0; 1-110.
DR IntAct; Q6NLH0; 16.
DR STRING; 3702.AT3G16980.1-P; -.
DR EnsemblPlants; AT3G16980.1; AT3G16980.1; AT3G16980.
DR GeneID; 820954; -.
DR KEGG; ath:AT3G16980; -.
DR TAIR; At3g16980; -.
DR eggNOG; COG1594; -.
DR HOGENOM; HOG000228134; -.
DR InParanoid; Q6NLH0; -.
DR KO; K03017; -.
DR OMA; MHEIDEL; -.
DR ProtClustDB; CLSN2684187; -.
DR Genevestigator; Q6NLH0; -.
DR GO; GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.
DR GO; GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.
DR InterPro; IPR019761; DNA-dir_RNA_pol-M_15_CS.
DR InterPro; IPR001529; DNA-dir_RNA_pol_M/15kDasu.
DR InterPro; IPR012164; DNA-dir_RNApol_C11.
DR InterPro; IPR001222; Znf_TFIIS.
DR Pfam; PF02150; RNA_POL_M_15KD; 1.
DR Pfam; PF01096; TFIIS_C; 1.
DR PIRSF; PIRSF005586; RNApol_RpoM; 1.
DR SMART; SM00661; RPOL9; 1.
DR SMART; SM00440; ZnF_C2C2; 1.
DR PROSITE; PS01030; RNA_POL_M_15KD; 1.
DR PROSITE; PS51133; ZF_TFIIS_2; 1.
PE 3: Inferred from homology;
KW Complete proteome; DNA-directed RNA polymerase; Metal-binding;
KW Nucleus; Reference proteome; Transcription; Zinc; Zinc-finger.
SQ SEQUENCE 114 AA; 13276 MW; B7A782CEA84B65A1 CRC64;
MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT
DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF FVCCNPNCGH RWRE
//
