ID ZHD10_ORYSJ Reviewed; 359 AA.
AC Q6Z528; Q0J5F7;
DT 16-APR-2014, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 24-JAN-2024, entry version 90.
DE RecName: Full=Zinc-finger homeodomain protein 10;
DE Short=OsZHD10;
GN Name=ZHD10; OrderedLocusNames=Os08g0438400, LOC_Os08g34010;
GN ORFNames=OSJNBa0016C11.32, P0524F03.1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18713354; DOI=10.1111/j.1744-7909.2008.00681.x;
RA Hu W., dePamphilis C.W., Ma H.;
RT "Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini
RT zinc finger gene families.";
RL J. Integr. Plant Biol. 50:1031-1045(2008).
CC -!- FUNCTION: Putative transcription factor. {ECO:0000250}.
CC -!- SUBUNIT: Homo- and heterodimer with other ZFHD proteins. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- DOMAIN: The homeodomain differs form the typical one by having namely 4
CC instead of 3 extra amino acids inserted in the loop between helix 1 and
CC helix 2.
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DR EMBL; AP004702; BAD09869.1; -; Genomic_DNA.
DR EMBL; AP005159; BAD10155.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF23808.2; -; Genomic_DNA.
DR EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015648555.1; XM_015793069.1.
DR AlphaFoldDB; Q6Z528; -.
DR SMR; Q6Z528; -.
DR PaxDb; 39947-Q6Z528; -.
DR KEGG; osa:4345673; -.
DR eggNOG; ENOG502QWG3; Eukaryota.
DR HOGENOM; CLU_039237_1_0_1; -.
DR InParanoid; Q6Z528; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6Z528; OS.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR006455; Homeodomain_ZF_HD.
DR InterPro; IPR006456; ZF_HD_homeobox_Cys/His_dimer.
DR NCBIfam; TIGR01565; homeo_ZF_HD; 1.
DR NCBIfam; TIGR01566; ZF_HD_prot_N; 1.
DR PANTHER; PTHR31948:SF72; ZINC-FINGER HOMEODOMAIN PROTEIN 10; 1.
DR PANTHER; PTHR31948; ZINC-FINGER HOMEODOMAIN PROTEIN 2; 1.
DR Pfam; PF04770; ZF-HD_dimer; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS51523; ZF_HD_DIMER; 1.
PE 3: Inferred from homology;
KW DNA-binding; Homeobox; Metal-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..359
FT /note="Zinc-finger homeodomain protein 10"
FT /id="PRO_0000426048"
FT ZN_FING 39..90
FT /note="ZF-HD dimerization-type; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00856"
FT DNA_BIND 243..306
FT /note="Homeobox"
FT REGION 91..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 137..196
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 223..254
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 329..359
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 91..121
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 141..164
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT SITE 295
FT /note="Required for DNA-binding"
FT /evidence="ECO:0000250"
SQ SEQUENCE 359 AA; 36955 MW; EA34BAE459B29CAE CRC64;
MEAVVGVKYR PVVFPNGGAA AAAAGKSKAT PASATAAVYR ECLKNHAASL GGHAVDGCGE
FMPSPAADAA DPASLKCAAC GCHRNFHRRL PEAPPSPPLL ALPPPPPPPP PPPPPPQPQQ
HLPRTAAVAV APQLLLHGSH QRREQSPETD RVRGPGHHHD DDAAADDDDS EDSEMSDYDD
DRSASPLQAP PPVLSPGYLP SATHMLLSLG SASAPAVAAS RPHAAAAAMG PPPPPGAATS
ASRKRFRTKF SPEQKQRMQA LSERLGWRLQ KRDEAVVDEC CREIGVGKGV FKVWMHNNKH
NFLGGHSARR SAAAAAAAPL APPPVLTDFS INGSSTHAAA ADHAAATASG GGGGSPQST
//
