ID Q75IT2_ORYSJ Unreviewed; 911 AA.
AC Q75IT2;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 24-JAN-2024, entry version 135.
DE SubName: Full='putative pentatricopeptide (PPR) repeat-containing protein, PF01535' {ECO:0000313|EMBL:AAS79737.1};
DE SubName: Full=Os05g0365500 protein {ECO:0000313|EMBL:BAS93640.1};
GN Name=OSJNBb0111K12.9 {ECO:0000313|EMBL:AAS79737.1};
GN OrderedLocusNames=Os05g0365500 {ECO:0000313|EMBL:BAS93640.1};
GN ORFNames=OSNPB_050365500 {ECO:0000313|EMBL:BAS93640.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAS79737.1};
RN [1] {ECO:0000313|EMBL:AAS79737.1}
RP NUCLEOTIDE SEQUENCE.
RA Chow T.-Y., Hsing Y.-I.C., Chen C.-S., Chen H.-H., Liu S.-M., Chao Y.-T.,
RA Lee P.-F., Chang S.-J., Chen H.-C., Chen S.-K., Chen T.-R., Chen Y.-L.,
RA Cheng C.-H., Chung C.-I., Han S.-Y., Hsiao S.-H., Hsiung J.-N., Hsu C.-H.,
RA Kau P.-I., Lee M.-C., Leu H.-L., Li Y.-F., Lin S.-J., Lin Y.-C., Wu S.-W.,
RA Yu C.-Y., Yu S.-W., Wu H.-P., Shaw J.-F.;
RT "Oryza sativa BAC OSJNBb0111K12 genomic sequence.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000059680}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RA Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N.,
RA Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y.,
RA Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.,
RA Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M.,
RA Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M.,
RA Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
RA Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N.,
RA Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H.,
RA Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S.,
RA Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y.,
RA Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H.,
RA Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M.,
RA Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A.,
RA Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S.,
RA Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R.,
RA Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J.,
RA Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X.,
RA Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S.,
RA Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A.,
RA Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R.,
RA Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S.,
RA Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M.,
RA Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S.,
RA Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H.,
RA Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C.,
RA Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S.,
RA Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S.,
RA Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K.,
RA Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A.,
RA Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R.,
RA Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S.,
RA Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K.,
RA Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D.,
RA Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I.,
RA Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A.,
RA Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H.,
RA Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S.,
RA Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T.,
RA Kadowaki K., Sugiura M., Burr B., Sasaki T.;
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3] {ECO:0000313|EMBL:BAS93640.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=23299411; DOI=10.1093/pcp/pcs183;
RA Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H.,
RA Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T.,
RA Matsumoto T., Sasaki T., Itoh T.;
RT "Rice Annotation Project Database (RAP-DB): an integrative and interactive
RT database for rice genomics.";
RL Plant Cell Physiol. 54:E6-E6(2013).
RN [4] {ECO:0000313|EMBL:BAS93640.1, ECO:0000313|Proteomes:UP000059680}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5] {ECO:0000313|EMBL:BAS93640.1}
RP NUCLEOTIDE SEQUENCE.
RA Sakai H., Kawahara Y., Matsumoto T., Buell C.R., Itoh T.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AC121366; AAS79737.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93640.1; -; Genomic_DNA.
DR RefSeq; XP_015639291.1; XM_015783805.1.
DR AlphaFoldDB; Q75IT2; -.
DR SMR; Q75IT2; -.
DR STRING; 39947.Q75IT2; -.
DR PaxDb; 39947-Q75IT2; -.
DR EnsemblPlants; Os05t0365500-01; Os05t0365500-01; Os05g0365500.
DR GeneID; 4338555; -.
DR Gramene; Os05t0365500-01; Os05t0365500-01; Os05g0365500.
DR KEGG; osa:4338555; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_012783_1_0_1; -.
DR OMA; GFQTQMA; -.
DR OrthoDB; 1211854at2759; -.
DR Proteomes; UP000059680; Chromosome 5.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 9.
DR PANTHER; PTHR47937:SF2; PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN, PF01535'-RELATED; 1.
DR PANTHER; PTHR47937; PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 10.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|ProteomicsDB:Q75IT2};
KW Reference proteome {ECO:0000313|Proteomes:UP000059680};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 147..182
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 183..213
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 219..253
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 254..284
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 324..358
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 364..398
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 399..433
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 434..464
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 472..506
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 507..541
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 17..110
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 564..911
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..35
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 85..100
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 570..584
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 589..613
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 670..723
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 727..741
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 742..788
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 844..859
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 911 AA; 100818 MW; E3E0744B2C1FDB1E CRC64;
MALYRRLLLL RRLSTLHPHP SLSSSSSSTA SPAAAASATH HLLPPHAPLA PHARGFAFSS
AEEAAAERRR RKRRLRIEPP LHALRRDPSA PPPPRDPNAP RLPDTTSALV GPRLSLHNRV
QSLIRSGDLD GASVAARAAV TSRVRPTVFT CNAVAASMVR AGRHDDAVSL FDFFFRRSNI
VPNVVSYNTL ILAHCEAARV DSALQVYREM LDKAPFSPSA VTYRHLTKGL VAAGRIQDAL
DLLREMLNRG QGADSLVYNN LIAGYIEEDN WDKAFELFEE LQGRCLVYDG VVHTSFMEGY
WKKGMDKEAM ENYQSLLDKK FRMTPATCNV LLETLFKHDK DKEANDLWET MIDNHTPPSF
IGINSESYNV MVNQCFKKCK FHEAIEVFHR QPRKNVQMDV GCFNNIIGKL CENGMLEEAE
KLFEEMETKS VLPDVYTYTY LVDSCFKVGR VDDTIQYFYK MADGREHGPK FNIGFFNRMF
EGLTEAGRMD DALKVYGRMP DKEIKPNTTT FETLVNALCK EGDLDKAREL VSDMAKGGVT
PPPEFRDSVI DIFKNAGRQE EIEKAFEEKP VPLPPQPRPE YRPRNSPQGL PGFASNQTRG
SYMPHQGQPT YGSQPLHPGV GGSQAIQPQG MPLRPQQPVF GGPQVDKSEF GGRPLQHGPS
APDPRQPGVV SMTQPPNVST PNTWQHSGVH ATQGTHHGMG SPRPWQQSVG IGQVQQTDYS
SGPPMQPGFG HPQPPQPMHS APQTQQPGYG TSHPWHTGFN APQVQQPSYG GPQSSQHAVG
STQPPQAQFG APQAPPPLPG FHYQNRPEYG QAVDQHNRFG SPQGEPRFHT QPRQQGFDAQ
APGNHALQGQ NSFNARRGQV GFGNQGAPPE YGASPSQPSH GAAWNQRGYG LSEDQEDVNQ
QVVPHAYARV R
//
