ID Q75J05_ORYSJ Unreviewed; 247 AA.
AC Q75J05;
DT 05-JUL-2004, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2004, sequence version 1.
DT 27-MAR-2024, entry version 119.
DE RecName: Full=Cleavage stimulation factor 50 kDa subunit {ECO:0000256|ARBA:ARBA00029851};
GN OrderedLocusNames=LOC_Os03g54770 {ECO:0000313|EMBL:ABF98939.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:ABF98939.1};
RN [1] {ECO:0000313|EMBL:ABF98939.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG Rice Chromosome 3 Sequencing Consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S., Luo M.,
RA Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G.,
RA Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2] {ECO:0000313|EMBL:ABF98939.1}
RP NUCLEOTIDE SEQUENCE.
RA Buell R., Wing R.A., McCombie W.A., Ouyang S.;
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; DP000009; ABF98939.1; -; Genomic_DNA.
DR AlphaFoldDB; Q75J05; -.
DR HOGENOM; CLU_041619_0_0_1; -.
DR GO; GO:0005848; C:mRNA cleavage stimulating factor complex; IEA:InterPro.
DR GO; GO:0031124; P:mRNA 3'-end processing; IEA:InterPro.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR044633; CstF1-like.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR44133; CLEAVAGE STIMULATION FACTOR SUBUNIT 1; 1.
DR PANTHER; PTHR44133:SF2; CLEAVAGE STIMULATION FACTOR SUBUNIT 1; 1.
DR Pfam; PF00400; WD40; 3.
DR SMART; SM00320; WD40; 2.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE 4: Predicted;
KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}.
FT REPEAT 123..164
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 179..220
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 247 AA; 26555 MW; 259B3257B43A72C0 CRC64;
MDAAVQEAKL LRQVNALIVA HLRDHNLTQA AAAVAAATMT PLAPPEPDGD DSVPANQLLR
LVAKGLAVER EETGRGGGAF DSAAAAAGYG GLLPPLGTNA VDFSTQDVKG SSKSFPKHEA
RHVSDHKNVV RCAKFSPDGK YFASGSGDTS IKFFEVAKIK QMMLGDSKDG PVRPVIRTFY
DHTQPINDLD FHPESPILIS AAKDNTIRFF DFSKTVARKA FRVIQDTHNV RSVCFHPCGD
YLLAVPS
//
