ID Q7XCY4_ORYSJ Unreviewed; 1320 AA.
AC Q7XCY4;
DT 01-OCT-2003, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 2.
DT 27-MAR-2024, entry version 70.
DE SubName: Full=Retrotransposon protein, putative, Ty1-copia subclass {ECO:0000313|EMBL:AAP54573.2};
GN OrderedLocusNames=LOC_Os10g36720 {ECO:0000313|EMBL:AAP54573.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAP54573.2};
RN [1] {ECO:0000313|EMBL:AAP54573.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=12791992; DOI=10.1126/science.1083523;
RG Rice Chromosome 10 Sequencing Consortium;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2] {ECO:0000313|EMBL:AAP54573.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S.;
RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAP54573.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000086; AAP54573.2; -; Genomic_DNA.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF22; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 242..257
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 485..650
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 188..239
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 729..774
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 197..239
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 729..751
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 752..774
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1320 AA; 148103 MW; 380BBD58EEFF6008 CRC64;
MAGFADALRP DKFTGVHFKR WQIRVTLWLT AMKCFWVSTG KPEGVLTAEQ QKQFEEATTL
FVGCILSVLG DRLVEVYMHM TDAKELWDAL NTKFGATDAS NDLYIMEQFH DYKMADNRSV
VEQAHEIQTM AKVLELLKCV LPDKFVAGCI IAKLPPSWRS FGTALKHKRQ EYSVEGLIAS
LDVEEKAREK DAASKGDGGQ SSANVVHKAQ NKSKGKYKAQ QTTNFKKQKK NNNNPNQDER
TCFVCGQVGH LARKCPQRKG MKAPAGQTSK SANVTIGNTG DGSGYGNLPT VFSVNQSTNW
WVDTGANVHV CADISLFSSY QVARGSTVLM GNGSHASVHG VGTVDLKFTS GKIVQLKNVQ
HVPSIDRNLV SGSRLTRDGF KLVFESNKVV VSKHGYFIGK GYECGGLFRF SLSDFCNKSV
NHICGSVDDE ANVWHSRLCH INFGLMSRLS SMCLIPKFSI VKGSKCHSCV QSKQPRKPHK
AAEERNLAPL ELLHSDLCEM NGVLTKGGKR YFMTLIDDAT RFCYVYLLKT KDEALDYFKI
YKAEVENQLD RKIKRLRSDR GGEFFSNEFD LFCEEHGIIH ERTPPYSPES NGIAERKNRT
LTDLVNAMLD TAGLPKAWWG EALLTSNHVL NRVPNRNKDK TPYEIWIGRK PSLSYLRTWG
CLAKVNVPIT KKRKLGPKTV DCVFLGYAHH SIAYRFLIVK SEVPDMHVGT IMESRDATFF
ESFFPMKDTH SGSNQPSEII PSSITPPEQT EHTHELVSEE DVSEAPRRSK RQRTAKSFGD
DFTVYLVDDT PKSISEAYAS PDADYWKEAV RSEMDSIIAN GTWEVTERPY GCKPVGCKWV
FKKKLRPDGT IEKYKARLVA KGYTQKEGED FFDTYSPVAR LTTIRVLLSL AASHGLLVHQ
MDVKTAFLNG ELDEEIYMDQ PDGFVVEGQE GKVCKLLKSL YGLKQAPKQW HEKFDKTLTS
AGFAVNEADK CVYYRHGGGE GVILCLYVDD ILIFGTNLEV INEVKSFLSQ NFDMKDLGVA
DVILNIKLIR GENGITLLQS HYVEKILNRF GYIDSKPSPT PYDPSLLLRK NKRIARNQLE
YSQIIGSLMY LASATRPDIS FAVSKLSRFT SNPGDDHWRA LERVMRYLKG TVELGLHYTG
YPAVLEGYSD SNWISDVDEI KATSGYVFTL GGGAVSWRSC KQTILTRSTM EAELTALDTA
TVEAEWLRDL LMDLPVVEKP VPTILMNCDN QTTCEKTIEV CQEIKKLRSY NVGLHPNSEK
PGRSLHEGTI TKCDRQCIEG DGFETHSILE GTHLCELDCW LQSMKILGES SRKLTKDLGV
//
