ID Q7XD57_ORYSJ Unreviewed; 1479 AA.
AC Q7XD57;
DT 01-OCT-2003, integrated into UniProtKB/TrEMBL.
DT 22-AUG-2006, sequence version 2.
DT 27-MAR-2024, entry version 74.
DE SubName: Full=Retrotransposon protein, putative, Ty1-copia subclass {ECO:0000313|EMBL:AAP54390.2};
GN OrderedLocusNames=LOC_Os10g34890 {ECO:0000313|EMBL:AAP54390.2};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAP54390.2};
RN [1] {ECO:0000313|EMBL:AAP54390.2}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=12791992; DOI=10.1126/science.1083523;
RG Rice Chromosome 10 Sequencing Consortium;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2] {ECO:0000313|EMBL:AAP54390.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell C.R., Wing R.A., McCombie W.R., Messing J., Yuan Q., Ouyang S.;
RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAP54390.2}
RP NUCLEOTIDE SEQUENCE.
RA Buell R.;
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DP000086; AAP54390.2; -; Genomic_DNA.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648:SF22; RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94; 1.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Signal {ECO:0000256|SAM:SignalP}; Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT SIGNAL 1..18
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 19..1479
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004293506"
FT TRANSMEM 100..124
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 136..160
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 425..440
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 661..826
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 370..404
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 922..946
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1479 AA; 165633 MW; 5196720A8C84B198 CRC64;
MAMIFLLAAL STTHLASSLR PGAVAGGACR PSGYLPGKSY GRAIMFLGSA RRDYSLFVNI
YFIFTNMSNT GDKEKETPVN TNGGNTASNS SGGPFLGYNL ITLFQLEVLL LMFIAMSTLC
HYVIVDAYST LSMLMLITFT TITGSNPIVN IMFIILLFWI KICRIMTKFP TIQKPDRSFS
VVGFAAALKP HAFDGSNYKR WKTRALLWLT AMQCFYVSRG KRSEPPLSPE EEAKFEASDC
LFRGALISVL ADNIVDVYMH MPSGKDMRDA LEAKFGVSDA GSELYVMEQF YDYKMVDDRS
VVEQAHEIQM LAKELENNNC ELPDKFVAGG IIAKLPPSWS DFATSLKHKR QEFSVPDLIG
SLGVEEKARA KDVRGKKVEG GSSANMVQKK NPHASHNNKK VKPDVKPKAA TNFKKKSKGK
AKGDCFVCGK SGHWAKDCPE RKDRKSANMI ISEGGGTSGY GKILPTVLSV FHSPDWWVDT
GANIHVCADI SLFSSYQVGR GSSLLMGNGS LAAVHGVGTV DLKFTSGKTV QLKNVQHVPS
IKKNLVSGSL LCREDFRLVF ESNKCVVSKY GTFVGKGYDS GGLFRFSLND MCNNHNAVNH
ISENDESNVW HSRLCHVNFG CMTRLANMSL IPKFTLVKGS KCHTCVQSKQ PRKPHKASEA
RNLAPLELIH SDLCEMNGVL TKGGKKYFMT LIDDCTRFCY VYLLKTKDEA LHFFKIYKAE
VENQLERKIK RLRSDRGGEY FSNEFASFCE EFGIIHEMTP PYSPQSNGVA ERKNRTLTEM
VNAMLDTAGL SKEWWGEAVL TACHVLNKIP MKHKEVTPFE EWERKKLNLS YLRTWGCLAK
VNVPIAKKRK LGPKTVDCVF LGYAIHSVGY RFLIVNSGVP DMHVGTILES RDATFFENEF
PMKYTPSTSS KETVMPHEHF APIEHNDQTP EENPEEDNIV DTRKSKRQRV AKSFGDDYIV
YLVDDTPRTI EEAYSSPDAD YWKEAVCSEM DSIMSNGTWE VVERPYGCKP IGCKWVFKKK
LRPDGTIEKY KARLVAKGYT QKEGEDFFDT YSPVARLTTI RVLLALAASH GLLVHQMDVK
TAFLNGELEE EIYMDQPDGY VLEGQEGMVC KLLKSLYGLK QAPKQWHEKF DTTLTSAGFV
VNEADKCVYY RYGGGEGVIL CLYVDDILIF GTSLNVIEEV KDYLSKSFEM KDLGEADVIL
NIKLQRGDEG GITLVQSHYV DKVLSRFGYS DCKPAPTPYD PSVLLRKNRR IARDQLRYSQ
IIGSLMYLAS ATRPDISFAV SKLSRFVSNP GDDHWRALER VMRYLKGTMS YGIHYTGYPK
VLEGYSDSNW ISDADEIKAT SGYVFTLGGG AVSWKSCKQT ILTRSTMEAE LTALDTATVE
AEWLRELLMD LPVVEKPVPA ILMNCDNQIV IIKVNSSKDN MKSSRHIKRR LKSVRKQKNS
GVIALDYVQT ARNLADQFTK GLPCNVIDSA SREMGLIPT
//
