ID Q84RZ7_ORYSJ Unreviewed; 1268 AA.
AC Q84RZ7;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 22-FEB-2023, entry version 77.
DE SubName: Full=Hypothetical polyprotein {ECO:0000313|EMBL:BAC65862.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAC65862.1};
RN [1] {ECO:0000313|EMBL:BAC65862.1}
RP NUCLEOTIDE SEQUENCE.
RA Ohtsubo E., Ohtsubo H.;
RT "Oryza sativa (japonica cultivar-group) copia-type retrotransposon, RIRE5
RT DNA.";
RL Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AB105803; BAC65862.1; -; Genomic_DNA.
DR AlphaFoldDB; Q84RZ7; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR025724; GAG-pre-integrase_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR11439; GAG-POL-RELATED RETROTRANSPOSON; 1.
DR PANTHER; PTHR11439:SF436; RETROTRANSPOSON PROTEIN-RELATED; 1.
DR Pfam; PF13976; gag_pre-integrs; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 215..230
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 450..615
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 158..206
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 187..206
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1268 AA; 142303 MW; 9ED0A812211102B2 CRC64;
MHCFFVSRGK PSEPPLSPEE EAKFEATDCL FRGALISVLA DNIVDVYMHI PSGKDMWDAL
EAKFGVSDAG SELYVMEQFY DYKMVDDRSV VEQAHEIQML VKELENNHCE LPDKFVAGGI
IAKLPPSWSD FATSLKHKRQ EFSVTDLIGS LGIEEKARAK DNRGKKIEGG SSANLVQKKN
PHASHNNNKK VKPDVKPKAT TNFKKKGKGK AKGDCFVCGK PGHWAKDCPE RKDKKSANMV
ISEDGGTLGY GKFLPTVLSV CHSPDWWVDT GANIHVCADI SLFSSYQVGR GSSLLMGNGS
LAAVHGVGTV DLKFTSGKIV QLKNVQHVPS IKKNLVSGSL LCRDGFRLVF ESNKCVVSKY
GTFIGKGYDS GGLFRFSLDD MCNKVVNHVS DDDDESNVWH SRLCHVNFGC MTRLANMSLI
PKFTLVKGSK CHTCVQSKQP RKPHKASEAR NLAPLELVHS DLCEMNGVLT KGGKKYFMTL
IDDCTRFCYV YLLKTKDEAL HYFKIYKAEV ENQLERKIKR LRSDRGGEYF SNEFTSFCEE
YGIIHERTPP YSPQSNGVAE RKNRTLTEMV NAMLDTAGLS KEWWGEAILT ACHVLNRIPT
KHKEVTPFEE WERKKLNLSH LRTWGCLAKV NVPIAKKRKL GPKTVDCVFL GYAIHSVGYR
FLIVNSGVPD MRVGTITESR DATFFENEFP MKNAPSTSSQ EPILSPEHFV PIEHIDQTLE
ENPEEDNIVA TRKSKRQRTA KSFGDDYIVY LVDDTPRTIE EAYSSPDADY WKEAVRSEMD
SIMSNGTWEV VERPYGCKPV GCKWVFKKKL RPDGTIEKYK ARLVAKGYTQ KEGEDFFDTY
SPVARLTTIR VLLALAASHG LLVHQMDVKT AFLNGELEEE IYMDQPDGYV LEGQEGMVCK
LLKSLYGLKQ APKQWHEKFD NTLTSAGFVV NEADKCVYYR YGGGEGVILC LYVDDILIFG
TSLNVIEEVK DFLSKSFEMK DLGVADVILN IKLLRGDEGG ITLVQSHYVD KVLSRFGYSD
CKAAPTPYDP SVLLRKNRRI ARDQLRYSQI IGSLMYLASA TRPDISFAVS KLSQFVSNPG
DDHWHALERV MRYLKGTMSY GIHYAGYPKV LEGYSDSNWI SDADEIKATS GYVFTLGGGA
VSWKSCKQTI LTRSTMEAEL TALDTATVEA EWLRELLMDL PVVEKPVPAI LMNCDNQTVI
IKVNSSKDNM KSSRHVKRRL KSVRKQKNSG VIALDYVQTA KNLADQFTKG LPRNVIDCAS
REMGLRPT
//