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Database: UniProt
Entry: Q84RZ7_ORYSJ
LinkDB: Q84RZ7_ORYSJ
Original site: Q84RZ7_ORYSJ 
ID   Q84RZ7_ORYSJ            Unreviewed;      1268 AA.
AC   Q84RZ7;
DT   01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT   01-JUN-2003, sequence version 1.
DT   22-FEB-2023, entry version 77.
DE   SubName: Full=Hypothetical polyprotein {ECO:0000313|EMBL:BAC65862.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:BAC65862.1};
RN   [1] {ECO:0000313|EMBL:BAC65862.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Ohtsubo E., Ohtsubo H.;
RT   "Oryza sativa (japonica cultivar-group) copia-type retrotransposon, RIRE5
RT   DNA.";
RL   Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; AB105803; BAC65862.1; -; Genomic_DNA.
DR   AlphaFoldDB; Q84RZ7; -.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR025724; GAG-pre-integrase_dom.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR013103; RVT_2.
DR   InterPro; IPR001878; Znf_CCHC.
DR   InterPro; IPR036875; Znf_CCHC_sf.
DR   PANTHER; PTHR11439; GAG-POL-RELATED RETROTRANSPOSON; 1.
DR   PANTHER; PTHR11439:SF436; RETROTRANSPOSON PROTEIN-RELATED; 1.
DR   Pfam; PF13976; gag_pre-integrs; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF00665; rve; 1.
DR   Pfam; PF07727; RVT_2; 1.
DR   Pfam; PF00098; zf-CCHC; 1.
DR   SMART; SM00343; ZnF_C2HC; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT   DOMAIN          215..230
FT                   /note="CCHC-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50158"
FT   DOMAIN          450..615
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          158..206
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        187..206
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1268 AA;  142303 MW;  9ED0A812211102B2 CRC64;
     MHCFFVSRGK PSEPPLSPEE EAKFEATDCL FRGALISVLA DNIVDVYMHI PSGKDMWDAL
     EAKFGVSDAG SELYVMEQFY DYKMVDDRSV VEQAHEIQML VKELENNHCE LPDKFVAGGI
     IAKLPPSWSD FATSLKHKRQ EFSVTDLIGS LGIEEKARAK DNRGKKIEGG SSANLVQKKN
     PHASHNNNKK VKPDVKPKAT TNFKKKGKGK AKGDCFVCGK PGHWAKDCPE RKDKKSANMV
     ISEDGGTLGY GKFLPTVLSV CHSPDWWVDT GANIHVCADI SLFSSYQVGR GSSLLMGNGS
     LAAVHGVGTV DLKFTSGKIV QLKNVQHVPS IKKNLVSGSL LCRDGFRLVF ESNKCVVSKY
     GTFIGKGYDS GGLFRFSLDD MCNKVVNHVS DDDDESNVWH SRLCHVNFGC MTRLANMSLI
     PKFTLVKGSK CHTCVQSKQP RKPHKASEAR NLAPLELVHS DLCEMNGVLT KGGKKYFMTL
     IDDCTRFCYV YLLKTKDEAL HYFKIYKAEV ENQLERKIKR LRSDRGGEYF SNEFTSFCEE
     YGIIHERTPP YSPQSNGVAE RKNRTLTEMV NAMLDTAGLS KEWWGEAILT ACHVLNRIPT
     KHKEVTPFEE WERKKLNLSH LRTWGCLAKV NVPIAKKRKL GPKTVDCVFL GYAIHSVGYR
     FLIVNSGVPD MRVGTITESR DATFFENEFP MKNAPSTSSQ EPILSPEHFV PIEHIDQTLE
     ENPEEDNIVA TRKSKRQRTA KSFGDDYIVY LVDDTPRTIE EAYSSPDADY WKEAVRSEMD
     SIMSNGTWEV VERPYGCKPV GCKWVFKKKL RPDGTIEKYK ARLVAKGYTQ KEGEDFFDTY
     SPVARLTTIR VLLALAASHG LLVHQMDVKT AFLNGELEEE IYMDQPDGYV LEGQEGMVCK
     LLKSLYGLKQ APKQWHEKFD NTLTSAGFVV NEADKCVYYR YGGGEGVILC LYVDDILIFG
     TSLNVIEEVK DFLSKSFEMK DLGVADVILN IKLLRGDEGG ITLVQSHYVD KVLSRFGYSD
     CKAAPTPYDP SVLLRKNRRI ARDQLRYSQI IGSLMYLASA TRPDISFAVS KLSQFVSNPG
     DDHWHALERV MRYLKGTMSY GIHYAGYPKV LEGYSDSNWI SDADEIKATS GYVFTLGGGA
     VSWKSCKQTI LTRSTMEAEL TALDTATVEA EWLRELLMDL PVVEKPVPAI LMNCDNQTVI
     IKVNSSKDNM KSSRHVKRRL KSVRKQKNSG VIALDYVQTA KNLADQFTKG LPRNVIDCAS
     REMGLRPT
//
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