ID Q88QJ7_PSEPK Unreviewed; 640 AA.
AC Q88QJ7;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 133.
DE SubName: Full=Selenocysteyl-tRNA-specific translation elongation factor {ECO:0000313|EMBL:AAN66123.1};
DE EC=3.6.5.- {ECO:0000313|EMBL:AAN66123.1};
GN Name=selB {ECO:0000313|EMBL:AAN66123.1};
GN OrderedLocusNames=PP_0494 {ECO:0000313|EMBL:AAN66123.1};
OS Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
OS / KT2440).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=160488 {ECO:0000313|EMBL:AAN66123.1, ECO:0000313|Proteomes:UP000000556};
RN [1] {ECO:0000313|EMBL:AAN66123.1, ECO:0000313|Proteomes:UP000000556}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440
RC {ECO:0000313|Proteomes:UP000000556};
RX PubMed=12534463; DOI=10.1046/j.1462-2920.2002.00366.x;
RA Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H.,
RA Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M.,
RA Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R.,
RA Nelson W., White O., Peterson J., Khouri H., Hance I., Chris Lee P.,
RA Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M.,
RA Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D.,
RA Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N.,
RA Dusterhoft A., Tummler B., Fraser C.M.;
RT "Complete genome sequence and comparative analysis of the metabolically
RT versatile Pseudomonas putida KT2440.";
RL Environ. Microbiol. 4:799-808(2002).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; AE015451; AAN66123.1; -; Genomic_DNA.
DR RefSeq; NP_742659.1; NC_002947.4.
DR RefSeq; WP_010951786.1; NC_002947.4.
DR AlphaFoldDB; Q88QJ7; -.
DR STRING; 160488.PP_0494; -.
DR PaxDb; 160488-PP_0494; -.
DR GeneID; 83677792; -.
DR KEGG; ppu:PP_0494; -.
DR PATRIC; fig|160488.4.peg.526; -.
DR eggNOG; COG3276; Bacteria.
DR HOGENOM; CLU_023030_2_0_6; -.
DR OrthoDB; 9803139at2; -.
DR PhylomeDB; Q88QJ7; -.
DR BioCyc; PPUT160488:G1G01-542-MONOMER; -.
DR Proteomes; UP000000556; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR GO; GO:0001514; P:selenocysteine incorporation; IEA:InterPro.
DR CDD; cd04171; SelB; 1.
DR CDD; cd15491; selB_III; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 3.
DR InterPro; IPR015190; Elong_fac_SelB-wing-hlx_typ-2.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR048931; SelB_WH_3rd.
DR InterPro; IPR015191; SelB_WHD4.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR009001; Transl_elong_EF1A/Init_IF2_C.
DR InterPro; IPR004535; Transl_elong_SelB.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR NCBIfam; TIGR00475; selB; 1.
DR PANTHER; PTHR43721:SF22; ELONGATION FACTOR TU, MITOCHONDRIAL; 1.
DR PANTHER; PTHR43721; ELONGATION FACTOR TU-RELATED; 1.
DR Pfam; PF21214; bact_SelB_WH_2nd; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF09106; SelB-wing_2; 1.
DR Pfam; PF09107; SelB-wing_3; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SUPFAM; SSF50465; EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 3.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW Elongation factor {ECO:0000313|EMBL:AAN66123.1};
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW Hydrolase {ECO:0000313|EMBL:AAN66123.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Protein biosynthesis {ECO:0000313|EMBL:AAN66123.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000000556}.
FT DOMAIN 1..172
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
SQ SEQUENCE 640 AA; 70141 MW; 5A446A1BE35D3E7A CRC64;
MIVGTAGHID HGKTALLLAL TGQAGDQRQE ERARGMTIDL GYRYAALSEG APLTGFIDVP
GHERFIHNML AGAHGIDLVL LVVAADDGVM PQTREHLAII ELLGIPQALV AISKCDRVEP
SRLAEVQMQV SELLAPGPYA GARQFPLSSI SGEGVDALRQ ALLEAEAGTR QRSVVGGFRL
AVDRAFAVTG AGVVVTGTAL AGRVSAGDTL LLGKAGKVVR VRGLHAQNQA ALVAEAGQRV
ALNIAAERLA VEQVHRGDWL VPEWLHAPSV RVDIELYLLP DEKRAFEHFS AVHVHLGTQD
VTARVALLEG ESLAAGQRMF AQLLLNAPLQ AVHGDRLVLR DQRAQRTLGG GKVLDPFAPS
RQRRSDARLQ QLQVLRDAAD LEQALPALLA SAPGGISPQR LERQFNRLRE TWQLPDDVRV
VATRQGQLLF ANAQWQALKQ QVLEQLARFH EQEPDQLGPD RDRLRRFVAL PLERPAFVSL
LDELLDDSAI ASSGPWLHLP DHKVQLSEAD SALWARLQPK LIAGQFDPPW VRTLASEENC
AEADVRLLLR KLARLGLVHQ VVRDLFYPEA TLQRMAALML GQASETQIVQ VAAFRDMLGI
GRKRSVQILE YFDRIGLTRR VADQRHIRAD SALAQQHARH
//
