ID Q89IA4_BRADU Unreviewed; 643 AA.
AC Q89IA4;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 131.
DE SubName: Full=Transcriptional regulatory protein {ECO:0000313|EMBL:BAC51000.1};
GN OrderedLocusNames=blr5735 {ECO:0000313|EMBL:BAC51000.1};
OS Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS NBRC 14792 / USDA 110).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Bradyrhizobium.
OX NCBI_TaxID=224911 {ECO:0000313|EMBL:BAC51000.1, ECO:0000313|Proteomes:UP000002526};
RN [1] {ECO:0000313|Proteomes:UP000002526}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110
RC {ECO:0000313|Proteomes:UP000002526};
RX PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT Bradyrhizobium japonicum USDA110.";
RL DNA Res. 9:189-197(2002).
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DR EMBL; BA000040; BAC51000.1; -; Genomic_DNA.
DR RefSeq; NP_772375.1; NC_004463.1.
DR AlphaFoldDB; Q89IA4; -.
DR STRING; 224911.AAV28_26185; -.
DR EnsemblBacteria; BAC51000; BAC51000; BAC51000.
DR KEGG; bja:blr5735; -.
DR PATRIC; fig|224911.5.peg.5850; -.
DR eggNOG; COG3829; Bacteria.
DR HOGENOM; CLU_000445_8_8_5; -.
DR InParanoid; Q89IA4; -.
DR OrthoDB; 9761019at2; -.
DR PhylomeDB; Q89IA4; -.
DR Proteomes; UP000002526; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF117; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF13188; PAS_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00086; PAC; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50113; PAC; 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000002526};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 160..212
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 238..290
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 322..550
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT COILED 281..312
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 643 AA; 71522 MW; BC8246415E15B939 CRC64;
MMATTPMLVS DDTAEAIDPR VAAFESSVEA TLLVDPYADQ IIDANPAACA LLGYDRALLR
QTRASTLHAG ELPALTVFTQ AVLHKGAYWT TALTPRHATG QNLRLEYAGC VLPHDGRTLV
QLTLTDLDAR RRRNVDAAAE DHMRSGISTW QRVERVFQDI ERENQLILRA AGEGIYGVNA
EGKTTFVNPA AERMLGWTAE ELVGKEIHPI VHHTHHDGRH YHNHDCPIYA AFRDGAVHQV
DGEVFWRKDG SPAWVEYTST PIRDRGVVVG AVVVFRDVSQ RREADEKLHA ALTEVDRLRE
RLELENAYLQ EEIRIETNPR GIIGQSEAIQ KTLRQVKLVA PTTAAVMITG ESGTGKELIA
RAIHEDSTRS DRPLIRVNCA AIPRELFESE FFGHVRGAFT GATRDRIGRF ELADGGTLFL
DEVGEIPLEL QGKLLRVLQE GNFERVGQER TRAVDVRVIA ATNRDLKQEV QRGRFREDLY
FRLNVFPIET VPLRERREDI PLLAQHFLTR EGKALKSNLR LSEGDARRLT RYDWPGNVRE
LQNVIERAAI LSQNGRLRID LPDTSGTPAP AGTARQKADA RPAVMTSAEM RDHERANILA
ALEACAGKVF GPGGAAEMLD IKPTTLASRI KALGIAPRPR AFG
//
