ID Q89PN9_BRADU Unreviewed; 305 AA.
AC Q89PN9;
DT 01-JUN-2003, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2003, sequence version 1.
DT 27-MAR-2024, entry version 122.
DE SubName: Full=Transcriptional regulatory protein {ECO:0000313|EMBL:BAC48706.1};
GN OrderedLocusNames=blr3441 {ECO:0000313|EMBL:BAC48706.1};
OS Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS NBRC 14792 / USDA 110).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Bradyrhizobium.
OX NCBI_TaxID=224911 {ECO:0000313|EMBL:BAC48706.1, ECO:0000313|Proteomes:UP000002526};
RN [1] {ECO:0000313|Proteomes:UP000002526}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110
RC {ECO:0000313|Proteomes:UP000002526};
RX PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT Bradyrhizobium japonicum USDA110.";
RL DNA Res. 9:189-197(2002).
CC -!- FUNCTION: NodD regulates the expression of the nodABCFE genes which
CC encode other nodulation proteins. NodD is also a negative regulator of
CC its own expression. Binds flavonoids as inducers.
CC {ECO:0000256|ARBA:ARBA00003502}.
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00009437}.
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DR EMBL; BA000040; BAC48706.1; -; Genomic_DNA.
DR RefSeq; NP_770081.1; NC_004463.1.
DR RefSeq; WP_011086225.1; NZ_CP011360.1.
DR AlphaFoldDB; Q89PN9; -.
DR STRING; 224911.AAV28_14235; -.
DR EnsemblBacteria; BAC48706; BAC48706; BAC48706.
DR GeneID; 64023188; -.
DR KEGG; bja:blr3441; -.
DR PATRIC; fig|224911.44.peg.3096; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_16_2_5; -.
DR InParanoid; Q89PN9; -.
DR OrthoDB; 9813056at2; -.
DR PhylomeDB; Q89PN9; -.
DR Proteomes; UP000002526; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006351; P:DNA-templated transcription; IBA:GO_Central.
DR CDD; cd08422; PBP2_CrgA_like; 1.
DR Gene3D; 3.40.190.290; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30537:SF5; HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TTDR-RELATED; 1.
DR PANTHER; PTHR30537; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Reference proteome {ECO:0000313|Proteomes:UP000002526}.
FT DOMAIN 1..59
FT /note="HTH lysR-type"
FT /evidence="ECO:0000259|PROSITE:PS50931"
SQ SEQUENCE 305 AA; 34499 MW; 5AA4C4F4C356A0CD CRC64;
MNRLQAMELF VSAVREGSFS AAGRRVGLSP ASVSRYIGEL EAQLGVQLLN RSTRHLGLTD
AGKIFFQRTE QVLHGIEDAE AAALSLQTAP RGTLRVHSRT LFGIRVLSPL IPGFQKLYPE
LKVELRLSER RPQLREDEFD VDFQIQAAKD PGLMLRRLLR SERILVASPD YVGRMPKLRE
PEDITRHNCL TYWMGPDDVV WKFMRRNRLR EIVVPSSFGS NNGVVLCDLA VAGHGIALLD
DYTVAEQLKS GRLVRLLPGF RVTNSTFDEG IYATFLQSSY LPEKIRVFVD YMAENVPRQV
KRSAQ
//
