ID Q8GI07_PSERE Unreviewed; 311 AA.
AC Q8GI07;
DT 01-MAR-2003, integrated into UniProtKB/TrEMBL.
DT 01-MAR-2003, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE SubName: Full=C terminus of YkoW-like protein {ECO:0000313|EMBL:BAC41559.1};
OS Pseudomonas resinovorans.
OG Plasmid pCAR1 {ECO:0000313|EMBL:BAC41559.1}.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=53412 {ECO:0000313|EMBL:BAC41559.1};
RN [1] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=12547188; DOI=10.1016/S0022-2836(02)01400-6;
RA Maeda K., Nojiri H., Shintani M., Yoshida T., Habe H., Omori T.;
RT "Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1
RT in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the
RT presence of large catabolic transposon Tn4676.";
RL J. Mol. Biol. 326:21-33(2003).
RN [2] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=15466034; DOI=10.1128/JB.186.20.6815-6823.2004;
RA Urata M., Miyakoshi M., Kai S., Maeda K., Habe H., Omori T., Yamane H.,
RA Nojiri H.;
RT "Transcriptional regulation of the ant operon, encoding two-component
RT anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of
RT Pseudomonas resinovorans strain CA10.";
RL J. Bacteriol. 186:6815-6823(2004).
RN [3] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RA Shintani M., Yano H., Habe H., Omori T., Yamane H., Tsuda M., Nojiri H.;
RT "Characterization of the replication, maintenance, and transfer features of
RT the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and
RT dioxin degradation.";
RL Appl. Environ. Microbiol. 72:3206-3216(2006).
RN [4] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RA Miyakoshi M., Shintani M., Terabayashi T., Kai S., Yamane H., Nojiri H.;
RT "Transcriptome analysis of Pseudomonas putida KT2440 harboring the
RT completely sequenced IncP-7 plasmid pCAR1.";
RL J. Bacteriol. 189:6849-6860(2007).
RN [5] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=19376894; DOI=10.1128/AEM.02373-08;
RA Takahashi Y., Shintani M., Li L., Yamane H., Nojiri H.;
RT "Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in
RT Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate
RT of the carbazole degradation pathway.";
RL Appl. Environ. Microbiol. 75:3920-3929(2009).
RN [6] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=19270415; DOI=10.1271/bbb.80665;
RA Takahashi Y., Shintani M., Yamane H., Nojiri H.;
RT "The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were
RT structurally identical IncP-7 carbazole degradative plasmids.";
RL Biosci. Biotechnol. Biochem. 73:744-746(2009).
RN [7] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=19134166; DOI=10.1186/1471-2164-10-12;
RA Miyakoshi M., Nishida H., Shintani M., Yamane H., Nojiri H.;
RT "High-resolution mapping of plasmid transcriptomes in different host
RT bacteria.";
RL BMC Genomics 10:12-12(2009).
RN [8] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=19930443; DOI=10.1111/j.1462-2920.2009.02110.x;
RA Shintani M., Takahashi Y., Tokumaru H., Kadota K., Hara H., Miyakoshi M.,
RA Naito K., Yamane H., Nishida H., Nojiri H.;
RT "Response of the Pseudomonas host chromosomal transcriptome to carriage of
RT the IncP-7 plasmid pCAR1.";
RL Environ. Microbiol. 12:1413-1426(2010).
RN [9] {ECO:0000313|EMBL:BAC41559.1}
RP NUCLEOTIDE SEQUENCE.
RC PLASMID=pCAR1 {ECO:0000313|EMBL:BAC41559.1};
RX PubMed=20639326; DOI=10.1128/JB.00591-10;
RA Yun C.S., Suzuki C., Naito K., Takeda T., Takahashi Y., Sai F.,
RA Terabayashi T., Miyakoshi M., Shintani M., Nishida H., Yamane H.,
RA Nojiri H.;
RT "Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7
RT plasmid pCAR1, is a key global regulator that alters host function.";
RL J. Bacteriol. 192:4720-4731(2010).
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DR EMBL; AB088420; BAC41559.1; -; Genomic_DNA.
DR RefSeq; NP_758581.1; NC_004444.1.
DR AlphaFoldDB; Q8GI07; -.
DR CDD; cd01948; EAL; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR PANTHER; PTHR33121; CYCLIC DI-GMP PHOSPHODIESTERASE PDEF; 1.
DR PANTHER; PTHR33121:SF71; CYCLIC DI-GMP PHOSPHODIESTERASE PDEF; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF00990; GGDEF; 1.
DR SMART; SM00052; EAL; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
PE 4: Predicted;
KW Plasmid {ECO:0000313|EMBL:BAC41559.1}.
FT DOMAIN 1..38
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 47..301
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 311 AA; 34970 MW; F39CDDEA72FE50A9 CRC64;
MTLYPNDNEN ADTLLRHADQ AMYKAKQSGR NRFHLFDVSK DKMDKSAFDT VIRVRQALHD
GELCLHYQPK ISLSSGAVIG FEALLRWQHP RDGLILPQYF IPLIEQSDLI MEIGEWVIDQ
ALSQIEQWAD LGHSWSVSVN ISALHFKKEN FVKSLKFLLD SHPNVLPQML DIEITESVVI
EHLSHVTQCL IACQDLGVTF SLDDFGTGYS SLSYLKQLPT QSIKIDKSFI RDILIDKDSL
GLTKAIIGLA KSFNREVIAE GVETVEHEVL LMNLGCDVAQ GYGIAKPMPV EKVLSWVAKF
VPAHLSRGGN R
//
