ID Q8H9E4_ORYSJ Unreviewed; 1069 AA.
AC Q8H9E4;
DT 01-MAR-2003, integrated into UniProtKB/TrEMBL.
DT 01-MAR-2003, sequence version 1.
DT 08-NOV-2023, entry version 117.
DE SubName: Full=Os07g0476200 protein {ECO:0000313|EMBL:BAT01451.1};
DE SubName: Full=Putative TPR-containing nuclear phosphoprotein {ECO:0000313|EMBL:BAC16228.1};
GN OrderedLocusNames=Os07g0476200 {ECO:0000313|EMBL:BAT01451.1};
GN ORFNames=OSNPB_070476200 {ECO:0000313|EMBL:BAT01451.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAC16228.1};
RN [1] {ECO:0000313|EMBL:BAC16228.1}
RP NUCLEOTIDE SEQUENCE.
RA Guo C., Ban H., Honma M., Yamamoto N., Iwasaki T.;
RT "Cloning of an importin alpha-binding protein from rice.";
RL Submitted (MAR-2001) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000059680}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RA Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N.,
RA Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y.,
RA Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.,
RA Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M.,
RA Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M.,
RA Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
RA Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N.,
RA Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H.,
RA Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S.,
RA Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y.,
RA Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H.,
RA Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M.,
RA Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A.,
RA Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S.,
RA Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R.,
RA Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J.,
RA Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X.,
RA Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S.,
RA Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A.,
RA Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R.,
RA Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S.,
RA Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M.,
RA Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S.,
RA Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H.,
RA Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C.,
RA Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S.,
RA Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S.,
RA Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K.,
RA Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A.,
RA Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R.,
RA Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S.,
RA Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K.,
RA Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D.,
RA Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I.,
RA Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A.,
RA Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H.,
RA Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S.,
RA Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T.,
RA Kadowaki K., Sugiura M., Burr B., Sasaki T.;
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3] {ECO:0000313|EMBL:BAT01451.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=23299411; DOI=10.1093/pcp/pcs183;
RA Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H.,
RA Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T.,
RA Matsumoto T., Sasaki T., Itoh T.;
RT "Rice Annotation Project Database (RAP-DB): an integrative and interactive
RT database for rice genomics.";
RL Plant Cell Physiol. 54:E6-E6(2013).
RN [4] {ECO:0000313|EMBL:BAT01451.1, ECO:0000313|Proteomes:UP000059680}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000059680};
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5] {ECO:0000313|EMBL:BAT01451.1}
RP NUCLEOTIDE SEQUENCE.
RA Sakai H., Kawahara Y., Matsumoto T., Buell C.R., Itoh T.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AB057651; BAC16228.1; -; mRNA.
DR EMBL; AP014963; BAT01451.1; -; Genomic_DNA.
DR RefSeq; XP_015647367.1; XM_015791881.1.
DR AlphaFoldDB; Q8H9E4; -.
DR SMR; Q8H9E4; -.
DR STRING; 39947.Q8H9E4; -.
DR PaxDb; 39947-Q8H9E4; -.
DR EnsemblPlants; Os07t0476200-02; Os07t0476200-02; Os07g0476200.
DR GeneID; 4343217; -.
DR Gramene; Os07t0476200-02; Os07t0476200-02; Os07g0476200.
DR KEGG; osa:4343217; -.
DR eggNOG; KOG2002; Eukaryota.
DR HOGENOM; CLU_006386_1_1_1; -.
DR InParanoid; Q8H9E4; -.
DR OMA; EHWLTIA; -.
DR OrthoDB; 3573659at2759; -.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q8H9E4; baseline and differential.
DR GO; GO:0016593; C:Cdc73/Paf1 complex; IBA:GO_Central.
DR GO; GO:0000993; F:RNA polymerase II complex binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR031101; Ctr9.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR14027; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9; 1.
DR PANTHER; PTHR14027:SF2; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 HOMOLOG; 1.
DR Pfam; PF13414; TPR_11; 1.
DR Pfam; PF13432; TPR_16; 1.
DR Pfam; PF13174; TPR_6; 1.
DR Pfam; PF13181; TPR_8; 2.
DR SMART; SM00028; TPR; 13.
DR SUPFAM; SSF81901; HCP-like; 1.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS50005; TPR; 3.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|ProteomicsDB:Q8H9E4};
KW Reference proteome {ECO:0000313|Proteomes:UP000059680};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}.
FT REPEAT 207..240
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 352..385
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 386..419
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 898..1069
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 898..961
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1030..1054
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1069 AA; 122310 MW; 20AC626F06C6F4D4 CRC64;
MASVYIPVQG TEEEVRVALD QLPADASDIL DILKAEQAPL HLWLIIAREY FKQGKIEQFR
QILEEGSGPE IDEYYADVKY ERIAILNALG AFHTFLGKVE RAQQKEVHFK EATQCYNRAS
RIDETEPSTW IGRGQLCVVK HDLQMASDSF KIVLDEDGSN FPALLGQASV YFLMGDSEQQ
HKKALDYYRN SLDLYKRALR AYTSCPAAVR LGIAFCRYKL GQSDKARQAF QRVLQLDPEN
IDALVALAIM DLQTNEAGGI RRGMEKMRRA FEIYPYCTLA LNHLANHYFF TGQHFVVEQL
TETALSSSNH GLLKSHAFYN LARSYHSKGD IETAGRYYMA SVNEISKPQD FVLPFFGLGQ
IQLKFADYKS SLASFEKVLE VHPENCESLK AIGHIYAKSG ENDKAIETFK KVTRIDPKDH
QAFMELGELL VQSDWATAME YLKTARNLLK KAGEKIPIEL LNGIGLLHFE KGELEMAEQS
FKEALGDGFW VSIIDGSVGS SVVNWSIQYR DQSFFQQLEE EGTPLELPWD KVTTLFNYAR
LFEELHDTVK ASLFYRLIIF KYPDYIDTYL RLAAIAKEKN NLQLSIELIG DALKIDDKYP
NALSMLGSLE LQGDETWLTA KEHFREAKDA SEGKDTYSML QLGNWNYFAA NRPEKKAPKF
EATHREKAKE LYSNVLKQHH GNMFAANGIG ILYAEKAQWD IAKELFTQVH EAASGSIFVQ
MPDVWINLAH IYFAQGFFQQ AVKMYQNCLR KFFYNTDATI LLYLARTHYE AEQWQDCRKT
LLRAIHLAPS NYLLRFNVGV SMQKFSASTL QKTKRTVDEV RATVSELQNA IRVFSLLSVA
STYHSHGFDE RKIETHIEYC KHLLDAAKVH RDAAEQAEQQ NKQKMEVARQ IALADEARRK
AEEQRKAQLE RRKQEDELKQ VMQQEQHFER VKEQWKTSSN TPGKRKDRSK HEDEEGGGEK
RRKKGGRRRK DQKTKAHYGE EEEDEYRDEP EAEDDYANTA RSNDGGDSEK APGHLLAAAG
LEDSDAEEDD MGHPQSAIER KRRAWSESED DEPVQRPVQP SAGENDLSD
//
