ID Q8W150_ORYSJ Unreviewed; 933 AA.
AC Q8W150;
DT 01-MAR-2002, integrated into UniProtKB/TrEMBL.
DT 01-MAR-2002, sequence version 1.
DT 27-MAR-2024, entry version 70.
DE SubName: Full=Polyprotein {ECO:0000313|EMBL:AAL68644.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAL68644.1};
RN [1] {ECO:0000313|EMBL:AAL68644.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=12372141;
RA McCarthy E.M., Liu J., Lizhi G., McDonald J.F.;
RT "Long terminal repeat retrotransposons of Oryza sativa.";
RL Genome Biol. 3:RESEARCH0053-RESEARCH0053(2002).
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DR EMBL; AF458768; AAL68644.1; -; Genomic_DNA.
DR AlphaFoldDB; Q8W150; -.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
FT DOMAIN 2..181
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 522..686
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 933 AA; 105607 MW; DFA9D8624B47CCA3 CRC64;
MLQNGIIQHS SSPFSSPALL VKKKDGSWRV CIDYRQLNAI TKKGTYPMPI IDELLDELAG
AKIFSKLDLR AGYHQIRMAE GEEFKTAFQT HSGHYEYKVM SFGLTGAPAT FQGAMNDTLR
PLLRKCALVF FDDILIYSPD MNSHLDHLKQ VLQLLDTHQW KVKLSKCDFA QTQISYLGHI
ISGQGVSTDP SKIQSIVDWA VPTTLKKLRG FLGLAGYYRK FVKDFGTLSK PLTQLLKKDA
PFVWSAEVNQ AFQALKHALT STPVLALPNF QQGFTIETDA SDIGIGAVLS QNQHPVAFVS
KALGPRTQGL STYEKECLAI MMAVDHWRPY LQFQEFLIIT DHHSLMHLTE QRLHTPWQQK
AFTKLSGLQF QIVYRKGKHN AAADALSRHV PEETSEFLGI STCSPVWLQD ILHGYDQDPL
ALSLLTGLAV NPSSYPHYSL SKGLIKHKGK VWVGNNSNIQ QQIISALHDS PLGGHSGFPV
TYKRIKSLFS WPHMKLTVQK QLASCAVCLQ AKPDRSKYPG LLQPLPVPDG AWQIISMDFI
EGLPKSYHQD CILVVVDKFS KYAHFMPLSH PFSALDVAKV FMLNVYKLHG LPQIIISDRD
KIFTSALWEQ LFLRSGTKLH LSSAYHPQSD GQTERVNQCL EIFLRCFVHA TPAKWSLWLH
LAEFWYNSSY HSALNKTPFE VLYGYPPSHF GIRADACVIS DLDSWLSERH LMTQLLRQHL
NRAQQVMKTQ ADKKRSFRSF QVGDWVFLKL QPYVQSSVAK RANHKLSFRY FGPYQILSKV
GSVAYKLQLP ADSMVHPVFH VSQLKGTQNF KHSIQSQLPN ITDHIQYPVQ ILDTRIQKKG
NKVVRQILVC WSNLPAVEAT WEDEEELKQR FPSALPWGQV SLQGVGFVSS NTASRELPLS
DEAQENTITR PLKRATRIKK SNVRLSGPEW ACK
//
