ID Q9C9L3_ARATH Unreviewed; 1028 AA.
AC Q9C9L3;
DT 01-JUN-2001, integrated into UniProtKB/TrEMBL.
DT 01-JUN-2001, sequence version 1.
DT 27-MAR-2024, entry version 148.
DE SubName: Full=Putative regulator of chromosome condensation; 48393-44372 {ECO:0000313|EMBL:AAG52535.1};
DE SubName: Full=Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein {ECO:0000313|EMBL:ANM60226.1};
GN OrderedLocusNames=At1g69710 {ECO:0000313|Araport:AT1G69710,
GN ECO:0000313|EMBL:ANM60226.1};
GN ORFNames=T6C23.9 {ECO:0000313|EMBL:AAG52535.1}, T6C23_9
GN {ECO:0000313|EMBL:ANM60226.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAG52535.1};
RN [1] {ECO:0000313|EMBL:AAG52535.1}
RP NUCLEOTIDE SEQUENCE.
RA Lin X., Kaul S., Town C.D., Benito M., Creasy T.H., Haas B.J., Wu D.,
RA Maiti R., Ronning C.M., Koo H., Fujii C.Y., Utterback T.R., Barnstead M.E.,
RA Bowman C.L., White O., Nierman W.C., Fraser C.M.;
RT "Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence.";
RL Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ANM60226.1, ECO:0000313|Proteomes:UP000006548}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3] {ECO:0000313|EMBL:AAG52535.1}
RP NUCLEOTIDE SEQUENCE.
RA Town C.D., Kaul S.;
RL Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:ANM60226.1}
RP NUCLEOTIDE SEQUENCE.
RG TAIR;
RA Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:ANM60226.1}
RP NUCLEOTIDE SEQUENCE.
RA Krishnakumar V., Cheng C.-Y., Chan A.P., Schobel S., Kim M., Ferlanti E.S.,
RA Belyaeva I., Rosen B.D., Micklem G., Miller J.R., Vaughn M., Town C.D.;
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|Proteomes:UP000006548}
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
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DR EMBL; AC013289; AAG52535.1; -; Genomic_DNA.
DR EMBL; CP002684; ANM60226.1; -; Genomic_DNA.
DR PIR; A96719; A96719.
DR RefSeq; NP_001322526.1; NM_001334419.1.
DR AlphaFoldDB; Q9C9L3; -.
DR SMR; Q9C9L3; -.
DR ProteomicsDB; 185647; -.
DR EnsemblPlants; AT1G69710.2; AT1G69710.2; AT1G69710.
DR GeneID; 843307; -.
DR Gramene; AT1G69710.2; AT1G69710.2; AT1G69710.
DR KEGG; ath:AT1G69710; -.
DR Araport; AT1G69710; -.
DR TAIR; AT1G69710; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9C9L3; baseline and differential.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 3.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR027988; BRX_N.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR PANTHER; PTHR22870:SF358; REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF13713; BRX_N; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 6.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 3.
DR PROSITE; PS50012; RCC1_3; 7.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000006548};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 247..305
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 306..357
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 358..412
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 413..464
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 478..529
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 530..581
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 582..633
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 638..700
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 969..1024
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 805..826
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 904..974
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 806..825
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 929..960
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1028 AA; 112723 MW; 64685868BD82FCAC CRC64;
MADSLRTSFS ERDVEQAITS LKKGSYLLKY GRRGKPKFCP FQLTSDESAL VWYSGKEEKQ
IKLSQVLRIV PGQRTPTFKR YPRPEKEYQS FSLICPDRSL DLICKDKDEA EVWVVGLKSL
ITRVKVSKWK TTIKPEITSA ECPTPHARRV SPFVTILDQV IQPSNETSTQ TRLGKVFSDI
VAITAPPSNN NQTEASGNLF CPFSPTPANV ENSNLRFSTN DPFRLSLSSA VSTSSHGSYH
EDFDALGDVF VWGESISDGV LSGTGNSLNS TTEDALLPKA LESTIVLDAQ NIACGKCHAV
LVTKQGEIFS WGEGKGGKLG HGLETDAQKP KFISSVRGLG FKSLACGDFH TCAITQSGDL
YSWGDGTHNV DLLGHGNESS CWIPKRVTGD LQGLYVSDVA CGPWHTAVVA SSGQLFTFGD
GTFGALGHGD RRSTSVPREV ESLIGLIVTK VACGVWHTAA VVEVTNEASE AEVDSSRGQV
FTWGDGEKGQ LGHGDNDTKL LPECVISLTN ENICQVACGH SLTVSRTSRG HVYTMGSTAY
GQLGNPTAKG NFPERVEGDI VEASVEEIAC GSYHVAVLTS KSEIYTWGKG LNGQLGHGNV
ENKREPAVVG FLREKQVKAI TCGSNFTAVI CVHKWVPGSE HSLCAGCRNP FNFRRKRHNC
YNCGLVFCKV CSSRKSLRAA LAPDMNKPYR VCYGCFTKLK KSRESSPSTP TSRTRKLLNM
RKSTDVSERD SLTQKFLSVN ARLSSADSSL HYSERRHHRR DLKPEVNNSN VFPSMNGSLQ
PVGSPFSKGS TALPKIPKNM MVKIPGSGMS SRTTSPVSVK STSPRRSYEV AAAESKQLKD
SFNQDMAGLK EQVEQLASKA HQLEEELEKT KRQLKVVTAM AADEAEENRS AKEVIRSLTT
QLKEMAEKQS QKDSISTNSK HTDKEKSETV TQTSNQTHIR SMVSQDSQNE NNLTSKSFAN
GHRKQNDKPE KVVQDEPGVY LTLLSLPGGG TELKRVRFSR KQFTEEQAEK WWGENGAKVC
ERHNILVS
//
