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Database: UniProt
Entry: Q9DGY6_9VIRU
LinkDB: Q9DGY6_9VIRU
Original site: Q9DGY6_9VIRU 
ID   Q9DGY6_9VIRU            Unreviewed;       239 AA.
AC   Q9DGY6;
DT   01-MAR-2001, integrated into UniProtKB/TrEMBL.
DT   01-MAR-2001, sequence version 1.
DT   24-JAN-2024, entry version 59.
DE   RecName: Full=Capsid protein {ECO:0000256|ARBA:ARBA00018091};
GN   Name=ORF4 {ECO:0000313|EMBL:CBA11896.1};
OS   Rice yellow mottle virus.
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC   Sobelivirales; Solemoviridae; Sobemovirus.
OX   NCBI_TaxID=31744 {ECO:0000313|EMBL:CAC10435.1};
RN   [1] {ECO:0000313|EMBL:CAC10435.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=11003473; DOI=10.1007/s007050070080;
RA   Pinel A., N'Guessan P., Bousalem M., Fargette D.;
RT   "Molecular variability of geographically distinct isolates of Rice yellow
RT   mottle virus in Africa.";
RL   Arch. Virol. 145:1621-1638(2000).
RN   [2] {ECO:0000313|EMBL:CAI59642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CI104 {ECO:0000313|EMBL:CAI59647.1}, CI109
RC   {ECO:0000313|EMBL:CAI59650.1}, CI113 {ECO:0000313|EMBL:CAI59654.1},
RC   CI114 {ECO:0000313|EMBL:CAI59655.1}, CI116
RC   {ECO:0000313|EMBL:CAI59657.1}, CI151 {ECO:0000313|EMBL:CAI59664.1},
RC   CI155 {ECO:0000313|EMBL:CAI59668.1}, CI156
RC   {ECO:0000313|EMBL:CAI59669.1}, CI157 {ECO:0000313|EMBL:CAI59670.1},
RC   CI47 {ECO:0000313|EMBL:CAI59642.1}, Gu21
RC   {ECO:0000313|EMBL:CAI59671.1}, Gu28 {ECO:0000313|EMBL:CAI59673.1},
RC   Gu29 {ECO:0000313|EMBL:CAI59674.1}, Ma148
RC   {ECO:0000313|EMBL:CAI59686.1}, Ma149 {ECO:0000313|EMBL:CAI59687.1},
RC   Ma180 {ECO:0000313|EMBL:CAI59691.1}, and Ma7
RC   {ECO:0000313|EMBL:CAI59676.1};
RX   PubMed=15910330; DOI=10.1111/j.1365-294X.2005.02578.x;
RA   Traore O., Sorho F., Pinel A., Abubakar Z., Banwo O., Maley J., Hebrard E.,
RA   Winter S., Sere Y., Konate G., Fargette D.;
RT   "Processes of diversification and dispersion of rice yellow mottle virus
RT   inferred from large-scale and high-resolution phylogeographical studies.";
RL   Mol. Ecol. 14:2097-2110(2005).
RN   [3] {ECO:0000313|EMBL:CBA11896.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Gu111 {ECO:0000313|EMBL:CBA11896.1}, Ma301
RC   {ECO:0000313|EMBL:CBA11900.1}, and Ma303
RC   {ECO:0000313|EMBL:CBA11902.1};
RA   Fargette D.;
RL   Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:CBA11896.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Gu111 {ECO:0000313|EMBL:CBA11896.1}, Ma301
RC   {ECO:0000313|EMBL:CBA11900.1}, and Ma303
RC   {ECO:0000313|EMBL:CBA11902.1};
RA   Pinel-Galzi A., Mpunami A., Sangu E., Rakotomalala M.;
RT   "Recombination, selection and clock-like evolution of Rice yellow mottle
RT   virus.";
RL   Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EMBL:CAI59642.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CI104 {ECO:0000313|EMBL:CAI59647.1}, CI109
RC   {ECO:0000313|EMBL:CAI59650.1}, CI113 {ECO:0000313|EMBL:CAI59654.1},
RC   CI114 {ECO:0000313|EMBL:CAI59655.1}, CI116
RC   {ECO:0000313|EMBL:CAI59657.1}, CI151 {ECO:0000313|EMBL:CAI59664.1},
RC   CI155 {ECO:0000313|EMBL:CAI59668.1}, CI156
RC   {ECO:0000313|EMBL:CAI59669.1}, CI157 {ECO:0000313|EMBL:CAI59670.1},
RC   CI47 {ECO:0000313|EMBL:CAI59642.1}, Gu21
RC   {ECO:0000313|EMBL:CAI59671.1}, Gu28 {ECO:0000313|EMBL:CAI59673.1},
RC   Gu29 {ECO:0000313|EMBL:CAI59674.1}, Ma148
RC   {ECO:0000313|EMBL:CAI59686.1}, Ma149 {ECO:0000313|EMBL:CAI59687.1},
RC   Ma180 {ECO:0000313|EMBL:CAI59691.1}, and Ma7
RC   {ECO:0000313|EMBL:CAI59676.1};
RA   Traore O., Sorho F., Pinel A., Abubakar Z.;
RT   "Processes of diversification and dispersion of Rice yellow mottle virus
RT   inferred from large-scale and high resolution phylogeographic studies.";
RL   Mol. Ecol. 0:0-0(0).
CC   -!- SIMILARITY: Belongs to the icosahedral plant coat protein family.
CC       {ECO:0000256|ARBA:ARBA00007446}.
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DR   EMBL; AJ279901; CAC10406.1; -; Genomic_RNA.
DR   EMBL; AJ279913; CAC10417.1; -; Genomic_RNA.
DR   EMBL; AJ279916; CAC10420.1; -; Genomic_RNA.
DR   EMBL; AJ279917; CAC10421.1; -; Genomic_RNA.
DR   EMBL; AJ279920; CAC10424.1; -; Genomic_RNA.
DR   EMBL; AJ279931; CAC10435.1; -; Genomic_RNA.
DR   EMBL; AJ885095; CAI59642.1; -; mRNA.
DR   EMBL; AJ885100; CAI59647.1; -; mRNA.
DR   EMBL; AJ885103; CAI59650.1; -; mRNA.
DR   EMBL; AJ885107; CAI59654.1; -; mRNA.
DR   EMBL; AJ885108; CAI59655.1; -; mRNA.
DR   EMBL; AJ885110; CAI59657.1; -; mRNA.
DR   EMBL; AJ885117; CAI59664.1; -; mRNA.
DR   EMBL; AJ885121; CAI59668.1; -; mRNA.
DR   EMBL; AJ885122; CAI59669.1; -; mRNA.
DR   EMBL; AJ885123; CAI59670.1; -; mRNA.
DR   EMBL; AJ885124; CAI59671.1; -; mRNA.
DR   EMBL; AJ885126; CAI59673.1; -; mRNA.
DR   EMBL; AJ885127; CAI59674.1; -; mRNA.
DR   EMBL; AJ885129; CAI59676.1; -; mRNA.
DR   EMBL; AJ885139; CAI59686.1; -; mRNA.
DR   EMBL; AJ885140; CAI59687.1; -; mRNA.
DR   EMBL; AJ885144; CAI59691.1; -; mRNA.
DR   EMBL; FN432856; CBA11896.1; -; Genomic_RNA.
DR   EMBL; FN432860; CBA11900.1; -; Genomic_RNA.
DR   EMBL; FN432862; CBA11902.1; -; Genomic_RNA.
DR   GO; GO:0039617; C:T=3 icosahedral viral capsid; IEA:UniProtKB-KW.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   Gene3D; 2.60.120.20; -; 1.
DR   InterPro; IPR000937; Capsid_prot_S-dom_vir.
DR   InterPro; IPR029053; Viral_coat.
DR   Pfam; PF00729; Viral_coat; 1.
DR   SUPFAM; SSF88633; Positive stranded ssRNA viruses; 1.
DR   PROSITE; PS00555; ICOSAH_VIR_COAT_S; 1.
PE   2: Evidence at transcript level;
KW   Capsid protein {ECO:0000313|EMBL:CAC10435.1};
KW   Virion {ECO:0000313|EMBL:CAC10435.1}.
FT   DOMAIN          78..233
FT                   /note="Icosahedral viral capsid protein S"
FT                   /evidence="ECO:0000259|Pfam:PF00729"
FT   REGION          1..49
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..16
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   239 AA;  25960 MW;  B27BE262DF6C2288 CRC64;
     MARKGKKTNS NQGQQGKKKS RRPRGRSAEP QLQRAPVAQA SRISGTVPGP LSSNTWPLHS
     VEFLADFKRS ATSADATTYD CVPFNLPRVW SLARCYSMWK PTRWDVVYLP EVSAAAAGSI
     EMCFLYDYAD TIPSDTGKMS RTAGFVTSSV WYGAEGCHLL SGGSARNAVV ASMDCSRVGW
     KRVTSSIPSK TDPNVVNTIL PARLAVRSSI KPTVDDTPGK LYAIVSMVLR DPVDPTLNT
//
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