ID Q9FW98_ORYSJ Unreviewed; 1382 AA.
AC Q9FW98;
DT 01-MAR-2001, integrated into UniProtKB/TrEMBL.
DT 01-MAR-2001, sequence version 1.
DT 24-JAN-2024, entry version 102.
DE SubName: Full=Non-LTR retroelement reverse transcriptase {ECO:0000313|EMBL:AAG13524.1};
GN Name=OSJNBa0026L12.31 {ECO:0000313|EMBL:AAG13524.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:AAG13524.1, ECO:0000313|Proteomes:UP000000763};
RN [1] {ECO:0000313|Proteomes:UP000000763}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000000763};
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RA Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N.,
RA Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y.,
RA Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.,
RA Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M.,
RA Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M.,
RA Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
RA Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N.,
RA Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H.,
RA Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S.,
RA Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y.,
RA Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H.,
RA Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M.,
RA Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A.,
RA Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S.,
RA Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R.,
RA Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J.,
RA Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X.,
RA Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S.,
RA Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A.,
RA Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R.,
RA Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S.,
RA Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M.,
RA Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S.,
RA Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H.,
RA Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C.,
RA Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S.,
RA Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S.,
RA Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K.,
RA Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A.,
RA Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R.,
RA Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S.,
RA Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K.,
RA Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D.,
RA Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I.,
RA Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A.,
RA Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H.,
RA Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S.,
RA Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T.,
RA Kadowaki K., Sugiura M., Burr B., Sasaki T.;
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2] {ECO:0000313|Proteomes:UP000000763}
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000000763};
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
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DR EMBL; AC068924; AAG13524.1; -; Genomic_DNA.
DR Proteomes; UP000000763; Chromosome 10.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR33116:SF67; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR PANTHER; PTHR33116; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED; 1.
DR Pfam; PF03372; Exo_endo_phos; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF56219; DNase I-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Nucleotidyltransferase {ECO:0000313|EMBL:AAG13524.1};
KW RNA-directed DNA polymerase {ECO:0000313|EMBL:AAG13524.1};
KW Transferase {ECO:0000313|EMBL:AAG13524.1}.
FT DOMAIN 489..770
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
SQ SEQUENCE 1382 AA; 156692 MW; 81ED13715A064B8D CRC64;
MEPNKLVTWG RNCRGLGSAA TVGELRWLVK SLRPSLVFLS ETKMRDKQAR NLMWSLGFSG
SFAVSCEGLS GGLALFWTTA YTVSLRGFNS HFIDVLVSTE ELPPWRISFV YGEPKRELRH
FFWNLLRRLH DQWRGPWLCC GDFNEVLCLD EHLGMRERSE PHMQHFRSCL DDCGLIDLGF
VGPKFTWSNK QDANSNSKVR LDRAVANGEF SRYFEDCLVE NVITTSSDHY AISIDLSRRN
HGQRRIPIQQ GFRFEAAWLR AEDYREVVEN SWRISSAGCV GLRGVWSVLQ QVAVSLKDWS
KASFGSVRRK ILKMERKLKS LRQSPVNDVV IQEEKLIEQQ LCELFEKEEI MARQRSRVDW
LREGDRNTAF FHARASARRR TNRIKELVRD DGSRCISQEG IKRMAEVFYE NLFSSEPCDS
MEEVLDAIPN KVGDFINGEL GKQYTNEEIK TALFQMGSTK APGPDGFPAL FYQTHWGILE
EHICNAVRGF LLGEEIPEGL CDSVVVLIPK VNNASHLSKF RPISLCNVLY KIASKVLANR
LKPFLPDIVS EFQSAFVPGR LITDSALVAY ECLHTIRKQH NKNPFFALKI DMMKAYDRVE
WAYLSGCLSK LGFSQDWINT VMRCVSSVRY AVKINGELTK PVVPSRGIRQ GDPISPYLFL
LCTEGLSCLL HKKEVAGELQ GIKNGRHGPP ISHLLFADDS IFFAKADSRN VQALKNTLRS
YCSASGQKIN LHKSSIFFGK RCPDAVKISV KSCLQVDNEV LQDSYLGMPT EIGLATTNFF
KFLPERIWKR VNGWTDRPLS RAGMETMLKA VAQAIPNYVM SCFRIPVSIC EKMKTCIADH
WWGFEDGKKK MHWKSWSWLS TPKFLGGMGF REFTTFNQAM LGRQCWRLLT DPDSLCSRVL
KGRYFPNSSF WEAAQPKSPS FTWRSLLFGR ELLAKGVRWG VGDGKTIKIF SDNWIPGFRP
QLVTTLSPFP TDATVSCLMN EDARCWDGDL IRSLFPVDIA KEILQIPISR HGDADFASWP
HDKLGLYSVR SAYNLARSEA FFADQSNSGR GMASRLLESQ KDWKGLWKIN APGKMKITLW
RAAHECLATG FQLRRRHIPS TDGCVFCNRD DTVEHVFLFC PFAAQIWEEI KGKCAVKLGR
NGFSTMRQWI FDFLKRGSSH ANTLLAVTFW HIWEARNNTK NNNGTVHPQR VVIKILSYVD
MILKHNTKTV DGQRGGNTQA IPRWQPPPAS VWMINSDAAI FSSSRTMGVG ALIRDNTGKC
LVACSEMISD VVLPELAEAL AIRRALGLAK EEGLEHIVMA SDCLTVIRRI QTSGRDRSGV
GCVIEDIKKL ASTFVLCSFM HVNRLSNLAA HSLARNAELS TCTVYRSVIP DYIRDILCDD
VA
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