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Database: UniProt
Entry: Q9FW98_ORYSJ
LinkDB: Q9FW98_ORYSJ
Original site: Q9FW98_ORYSJ 
ID   Q9FW98_ORYSJ            Unreviewed;      1382 AA.
AC   Q9FW98;
DT   01-MAR-2001, integrated into UniProtKB/TrEMBL.
DT   01-MAR-2001, sequence version 1.
DT   24-JAN-2024, entry version 102.
DE   SubName: Full=Non-LTR retroelement reverse transcriptase {ECO:0000313|EMBL:AAG13524.1};
GN   Name=OSJNBa0026L12.31 {ECO:0000313|EMBL:AAG13524.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:AAG13524.1, ECO:0000313|Proteomes:UP000000763};
RN   [1] {ECO:0000313|Proteomes:UP000000763}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000000763};
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RA   Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N.,
RA   Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y.,
RA   Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.,
RA   Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M.,
RA   Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M.,
RA   Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
RA   Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N.,
RA   Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H.,
RA   Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
RA   Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S.,
RA   Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y.,
RA   Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H.,
RA   Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
RA   Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA   Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M.,
RA   Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A.,
RA   Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S.,
RA   Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R.,
RA   Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J.,
RA   Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X.,
RA   Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S.,
RA   Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A.,
RA   Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R.,
RA   Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S.,
RA   Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M.,
RA   Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S.,
RA   Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H.,
RA   Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C.,
RA   Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S.,
RA   Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S.,
RA   Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K.,
RA   Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A.,
RA   Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R.,
RA   Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S.,
RA   Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K.,
RA   Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D.,
RA   Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I.,
RA   Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A.,
RA   Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H.,
RA   Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S.,
RA   Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T.,
RA   Kadowaki K., Sugiura M., Burr B., Sasaki T.;
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2] {ECO:0000313|Proteomes:UP000000763}
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare {ECO:0000313|Proteomes:UP000000763};
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
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DR   EMBL; AC068924; AAG13524.1; -; Genomic_DNA.
DR   Proteomes; UP000000763; Chromosome 10.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd06222; RNase_H_like; 1.
DR   CDD; cd01650; RT_nLTR_like; 1.
DR   Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR   InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR   InterPro; IPR044730; RNase_H-like_dom_plant.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR000477; RT_dom.
DR   InterPro; IPR026960; RVT-Znf.
DR   PANTHER; PTHR33116:SF67; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR   PANTHER; PTHR33116; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED; 1.
DR   Pfam; PF03372; Exo_endo_phos; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   Pfam; PF13966; zf-RVT; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF56219; DNase I-like; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
KW   Nucleotidyltransferase {ECO:0000313|EMBL:AAG13524.1};
KW   RNA-directed DNA polymerase {ECO:0000313|EMBL:AAG13524.1};
KW   Transferase {ECO:0000313|EMBL:AAG13524.1}.
FT   DOMAIN          489..770
FT                   /note="Reverse transcriptase"
FT                   /evidence="ECO:0000259|PROSITE:PS50878"
SQ   SEQUENCE   1382 AA;  156692 MW;  81ED13715A064B8D CRC64;
     MEPNKLVTWG RNCRGLGSAA TVGELRWLVK SLRPSLVFLS ETKMRDKQAR NLMWSLGFSG
     SFAVSCEGLS GGLALFWTTA YTVSLRGFNS HFIDVLVSTE ELPPWRISFV YGEPKRELRH
     FFWNLLRRLH DQWRGPWLCC GDFNEVLCLD EHLGMRERSE PHMQHFRSCL DDCGLIDLGF
     VGPKFTWSNK QDANSNSKVR LDRAVANGEF SRYFEDCLVE NVITTSSDHY AISIDLSRRN
     HGQRRIPIQQ GFRFEAAWLR AEDYREVVEN SWRISSAGCV GLRGVWSVLQ QVAVSLKDWS
     KASFGSVRRK ILKMERKLKS LRQSPVNDVV IQEEKLIEQQ LCELFEKEEI MARQRSRVDW
     LREGDRNTAF FHARASARRR TNRIKELVRD DGSRCISQEG IKRMAEVFYE NLFSSEPCDS
     MEEVLDAIPN KVGDFINGEL GKQYTNEEIK TALFQMGSTK APGPDGFPAL FYQTHWGILE
     EHICNAVRGF LLGEEIPEGL CDSVVVLIPK VNNASHLSKF RPISLCNVLY KIASKVLANR
     LKPFLPDIVS EFQSAFVPGR LITDSALVAY ECLHTIRKQH NKNPFFALKI DMMKAYDRVE
     WAYLSGCLSK LGFSQDWINT VMRCVSSVRY AVKINGELTK PVVPSRGIRQ GDPISPYLFL
     LCTEGLSCLL HKKEVAGELQ GIKNGRHGPP ISHLLFADDS IFFAKADSRN VQALKNTLRS
     YCSASGQKIN LHKSSIFFGK RCPDAVKISV KSCLQVDNEV LQDSYLGMPT EIGLATTNFF
     KFLPERIWKR VNGWTDRPLS RAGMETMLKA VAQAIPNYVM SCFRIPVSIC EKMKTCIADH
     WWGFEDGKKK MHWKSWSWLS TPKFLGGMGF REFTTFNQAM LGRQCWRLLT DPDSLCSRVL
     KGRYFPNSSF WEAAQPKSPS FTWRSLLFGR ELLAKGVRWG VGDGKTIKIF SDNWIPGFRP
     QLVTTLSPFP TDATVSCLMN EDARCWDGDL IRSLFPVDIA KEILQIPISR HGDADFASWP
     HDKLGLYSVR SAYNLARSEA FFADQSNSGR GMASRLLESQ KDWKGLWKIN APGKMKITLW
     RAAHECLATG FQLRRRHIPS TDGCVFCNRD DTVEHVFLFC PFAAQIWEEI KGKCAVKLGR
     NGFSTMRQWI FDFLKRGSSH ANTLLAVTFW HIWEARNNTK NNNGTVHPQR VVIKILSYVD
     MILKHNTKTV DGQRGGNTQA IPRWQPPPAS VWMINSDAAI FSSSRTMGVG ALIRDNTGKC
     LVACSEMISD VVLPELAEAL AIRRALGLAK EEGLEHIVMA SDCLTVIRRI QTSGRDRSGV
     GCVIEDIKKL ASTFVLCSFM HVNRLSNLAA HSLARNAELS TCTVYRSVIP DYIRDILCDD
     VA
//
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