ID C3H38_ARATH Reviewed; 676 AA.
AC Q9LIH5; Q56XB6;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 01-MAY-2013, entry version 73.
DE RecName: Full=Zinc finger CCCH domain-containing protein 38;
DE Short=AtC3H38;
GN OrderedLocusNames=At3g18640; ORFNames=K24M9.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II.
RT Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC
RT and BAC clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RG The Arabidopsis Information Resource (TAIR);
RL Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA Hayashizaki Y., Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and
RT rice.";
RL BMC Genomics 9:44-44(2008).
RN [5]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-118, AND MASS
RP SPECTROMETRY.
RC STRAIN=cv. Columbia; TISSUE=Seedling;
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
CC -!- SIMILARITY: Contains 1 C3H1-type zinc finger.
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DR EMBL; AP001303; BAB02222.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76125.1; -; Genomic_DNA.
DR EMBL; AK175797; BAD43560.1; -; mRNA.
DR EMBL; AK221759; BAD93829.1; -; mRNA.
DR IPI; IPI00547322; -.
DR RefSeq; NP_188494.1; NM_112750.2.
DR UniGene; At.50992; -.
DR ProteinModelPortal; Q9LIH5; -.
DR SMR; Q9LIH5; 217-243.
DR PaxDb; Q9LIH5; -.
DR PRIDE; Q9LIH5; -.
DR EnsemblPlants; AT3G18640.1; AT3G18640.1; AT3G18640.
DR GeneID; 821395; -.
DR KEGG; ath:AT3G18640; -.
DR TAIR; At3g18640; -.
DR eggNOG; NOG292381; -.
DR HOGENOM; HOG000107453; -.
DR InParanoid; Q9LIH5; -.
DR OMA; YCRFSHH; -.
DR PhylomeDB; Q9LIH5; -.
DR ProtClustDB; CLSN2915339; -.
DR Genevestigator; Q9LIH5; -.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR000571; Znf_CCCH.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 1: Evidence at protein level;
KW Complete proteome; DNA-binding; Metal-binding; Phosphoprotein;
KW Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1 676 Zinc finger CCCH domain-containing
FT protein 38.
FT /FTId=PRO_0000371993.
FT ZN_FING 214 243 C3H1-type.
FT MOD_RES 118 118 Phosphoserine.
SQ SEQUENCE 676 AA; 75581 MW; 7BA228F6014DFC11 CRC64;
MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN GEARTRSRVS
QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR ARRDAGSYDR HKTRTQVSPT
PIREFNKRGS DHLFDQSRSD HYGWEDNIRK PRETKYHTDD FREEAMMEGA RSSDYNNTDY
PEDNSRIRRR RSEFTGEKET QRRDGGDGEG GFHRSSNIPC KFFAAGTGFC RNGKYCRFSH
HVADRKQPQD NNNNFYRQDN NNHTSGHNKW NDVERLDNGR VGGIEVSRAS KKGVSESKGN
GSSSWIDDME MSPDWNYGVQ ALKKPVKEDH SVGIIGQSSQ SRVLKDDQRS SGMFSHGGRT
MAEKPVAASH QSYSNSVNVA PVETFNQNHN ALPYQSSLTA GGSQQVLAAA ATNFSVGSNL
SNLESGKVYQ DNHHSTVEKP VLVQNTVSRE QIDQITNISA SLAQFLANGQ PIPQLEQALQ
LPLHSESVQP NQATTQSNVV SSNPNQLWGL GMSTGAEGVP AVTASKISNV EEIQEVSLDP
KENGDKKTDE ASKEEEGKKT GEDTNDAENV VDEDEDGDDD GSDEENKKEK DPKGMRAFKF
ALVEVVKELL KPAWKEGKLN KDGYKNIVKK VAEKVTGTMQ SGNVPQTQEK IDHYLSASKP
KLTKLVQAYV GKIKKT
//
