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Database: UniProt
Entry: Q9LJ55_ARATH
LinkDB: Q9LJ55_ARATH
Original site: Q9LJ55_ARATH 
ID   Q9LJ55_ARATH            Unreviewed;      1250 AA.
AC   Q9LJ55;
DT   01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2000, sequence version 1.
DT   22-FEB-2023, entry version 90.
DE   SubName: Full=Retroelement pol polyprotein-like {ECO:0000313|EMBL:BAB02990.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702 {ECO:0000313|EMBL:BAB02990.1};
RN   [1] {ECO:0000313|EMBL:BAB02990.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA   Nakamura Y.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT   features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT   clones.";
RL   DNA Res. 7:217-221(2000).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130713; DOI=10.1038/35048706;
RG   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
RG   Institute for Genomic Research;
RG   Kazusa DNA Research Institute;
RA   Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA   Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
RA   Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N.,
RA   Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L.,
RA   Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S.,
RA   Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N.,
RA   Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P.,
RA   Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S.,
RA   Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H.,
RA   Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J.,
RA   Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B.,
RA   Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA   de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E.,
RA   Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G.,
RA   Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S.,
RA   Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA   Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA   Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA   Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA   Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA   Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA   Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA   Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT   "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL   Nature 408:820-822(2000).
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DR   EMBL; AP000736; BAB02990.1; -; Genomic_DNA.
DR   EMBL; AP002064; BAB02990.1; JOINED; Genomic_DNA.
DR   AlphaFoldDB; Q9LJ55; -.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR025724; GAG-pre-integrase_dom.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR013103; RVT_2.
DR   InterPro; IPR001878; Znf_CCHC.
DR   InterPro; IPR036875; Znf_CCHC_sf.
DR   PANTHER; PTHR11439; GAG-POL-RELATED RETROTRANSPOSON; 1.
DR   PANTHER; PTHR11439:SF436; RETROTRANSPOSON PROTEIN-RELATED; 1.
DR   Pfam; PF13976; gag_pre-integrs; 1.
DR   Pfam; PF14223; Retrotran_gag_2; 1.
DR   Pfam; PF07727; RVT_2; 1.
DR   SMART; SM00343; ZnF_C2HC; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50158; ZF_CCHC; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT   DOMAIN          189..204
FT                   /note="CCHC-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50158"
FT   REGION          146..169
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          625..680
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        625..656
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        663..680
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1250 AA;  142186 MW;  6F70344C7BBE45E3 CRC64;
     MGDIVLVTTG SKLKETSSAS ISCPLLSATN YNVWTMRMRL LLKVHKVWDT VEPGSEDVDK
     NDIARALIFQ SVPESLTLQI GELETAKEVW ESIKTKNVGA ERVKEARLQT LMAEFERAKM
     KETDTIEDFA GRLSEITTKL QHMYANHDSQ SQQGRGRGQG DRFYQRGRGR GRFGYQGYKQ
     ERDTSKVVCY RCDKLGHYAS SCPDRLLKLQ KAKEEEDNDT QEAEELMVHE VVYLNEKNVK
     PSEFETSSDA SNVWYLDNGA SNHMKVRFGD DSRIDIKGKG SVLFISKNKE KKILADVYFI
     PDLKSNIISL GQATESGCEV RMKDDLLIMH DKDGKLLVKA NRSKNRLYKV LMEIEPPKCL
     QAMVLSNSAK WHSRLGHIGV ETLKTMVKKD LVIGMPQMEV DKETCASCLL GKQVSKSFPQ
     ASSYRATQNL ELIHGDLCGP ITPPTSARNR YIFVLIDDHS RYMWSILLKE KNEPFEKSKR
     FKTRVEQESG VTIKTCRTDR AVRHATYVIN RVATRVLTNQ TPYEAYKGRK PNVEHIRVFG
     CVGYARIESP HLKKLDDISR SLVHLGTEPG SKAYCLLDLT THKIVVSRDV VFDETKSWKW
     NDLRSESTED SGNFVLGFEQ FGNNGLRRER EEHGSETSEK NTEDEDTSRV TEATETEEPI
     QEEGQPQENT QPTLRRSQRQ VSMPKYLEDY VLLAEEESEY LLSVINEEPW DYAEAKETQE
     WREACEDEIA SIEKNKTWDL VELPQGAKPI GLKWVFKLKK NAEGNINKYK ARLVAKGYVQ
     RHGIDFDEVF APVARIETVR FIIALAASNG WEVHHLDVKT AFLHGELKEI VFVSQPEGFT
     EKGSEGKVYK LNKALYGLRQ APRAWNNKLN KILGELKFVK CSKEPSLYRK QEKDDLLLVE
     VYVDDLLISG SSLKLINDFK KGMASKFEMS DLGLLTYYLG IEVIQYNGGI MLKQGRYAEK
     ILDETKMSDC NAVHIPMNSG LKLSKAGTEK GSHDSETEKN IEPKEYRRNI GCLRYLLHTR
     PDLSYCVGVL SRYMQEPKEG HGVAMKQILR YLRGTTSYGL SFKRGDKSGL IGFSDSSHNV
     DEDDGRSTTG HIFYLDGSLI TWCTQKQETV ALSSCEAEFM AATEGAKQAI WLQELLGEVT
     GEACKKVRLL IDNKSAIALA KNPVFHGRSK HIHKRYHFIR ECVENEQIEV EHVPGEEQKA
     NLLTKALGRI KFKEMRELVG VQELSKCEFK LKGVNVDKLE VSLRNKLTKS
//
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