ID Q9LNZ5_ARATH Unreviewed; 859 AA.
AC Q9LNZ5;
DT 01-OCT-2000, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2000, sequence version 1.
DT 24-JAN-2024, entry version 98.
DE SubName: Full=F9C16.23 {ECO:0000313|EMBL:AAF79679.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000313|EMBL:AAF79679.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2] {ECO:0000313|EMBL:AAF79679.1}
RP NUCLEOTIDE SEQUENCE.
RA Shinn P., Brooks S., Buehler E., Chao Q., Johnson-Hopson C., Khan S.,
RA Kieleczawa J., Kim C., Altafi H., Bei Q., Chin C., Chiou J., Choi E.,
RA Conn L., Conway A., Gonzales A., Hansen N., Howing B., Koo T., Lam B.,
RA Lee J., Lenz C., Li J., Liu A., Liu K., Liu S., Mukharsky N., Nguyen M.,
RA Palm C., Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A.,
RA Toriumi M., Vaysberg M., Yu G., Federspiel N.A., Theologis A., Ecker J.R.;
RT "Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome I.";
RL Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAF79679.1}
RP NUCLEOTIDE SEQUENCE.
RA Cheuk R., Shinn P., Brooks S., Buehler E., Chao Q., Johnson-Hopson C.,
RA Khan S., Kim C., Altafi H., Bei B., Chin C., Chiou J., Choi E., Conn L.,
RA Conway A., Gonzalez A., Hansen N., Howing B., Koo T., Lam B., Lee J.,
RA Lenz C., Li J., Liu A., Liu J., Liu S., Mukharsky N., Nguyen M., Palm C.,
RA Pham P., Sakano H., Schwartz J., Southwick A., Thaveri A., Toriumi M.,
RA Vaysberg M., Yu G., Davis R., Federspiel N., Theologis A., Ecker J.;
RL Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AC022314; AAF79679.1; -; Genomic_DNA.
DR PIR; C96504; C96504.
DR AlphaFoldDB; Q9LNZ5; -.
DR PhylomeDB; Q9LNZ5; -.
DR ExpressionAtlas; Q9LNZ5; baseline and differential.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR046349; C1-like_sf.
DR InterPro; IPR004146; DC1.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR32410:SF153; CHP-RICH ZINC FINGER PROTEIN-LIKE-RELATED; 1.
DR PANTHER; PTHR32410; CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN; 1.
DR Pfam; PF03107; C1_2; 5.
DR SMART; SM00249; PHD; 2.
DR SUPFAM; SSF57889; Cysteine-rich domain; 3.
PE 4: Predicted;
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 485..545
FT /note="Zinc finger PHD-type"
FT /evidence="ECO:0000259|SMART:SM00249"
FT DOMAIN 766..834
FT /note="Zinc finger PHD-type"
FT /evidence="ECO:0000259|SMART:SM00249"
FT REGION 153..172
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 859 AA; 98832 MW; 7F493CFE9C5CB9AB CRC64;
MDSESESKLI SFISQLVSRN NTDSENISCM IQTISLVSSM DLKSQPKPES KLMSLVTQTI
SLFNSMDLSS QPEPLRKLIS LIIEKLSHLN SVDSDYEPKP DSEFMSTFYE TYKLQPRPEI
ISIIHQIYSL FISTDTKSKP EPEVDSELMF VHSSMDSDSD SDSDLDSEEE EEEELISLLS
EMYSLYAFTT NEELELRGGP EELPKFKSFI SLTSKVITLV RSLDLDYSEP EPESEFISVV
AVVKQIMSFA NSISNSEPEW QFISSMTEMI RLISSIDLEP EWEPPMQLVA LFTHTFSLLY
YLDRDSELYT LIAQIIFIID YTDSEPESEW GLDQLMSLSP QWKVQLVQGK FHVTGKIERK
NKEKGKCQPE NRHRLYLAKG EEASHFICKD CNGEDHIECE KTPVEVKHLL HPKHSLQLVS
QKSSIIQTRK CFCCDEDLKK IFYYCTGCDY DMNIACAEKP PVLFIDRPKW HADTLALFQR
QAFLTCNVCA VADSSSPIYM CPPCDFVVHQ RCTGLPRVIR ISRHRHRISF TTSFDEGDWS
CGVCRRKIDN DYGGFSCIKD GCSYAAHSRC ATQKNVWDGI DLEGVPEEIE EEEVEPFVTI
SKGVIHHFSH QNHHLRLDEN RDRIYDENKL CQACIMPIYF GNDDVRKYED KCSACPWPCI
AGFSYECRKE GCSFKLHVQC ATISEPLVHG SHIHPLFLTS KPGEQRSCSV CKDSRFELTN
ETFNCIECEF ALCFGCATLP QKVRYKHDKH ILTLSYGKET STMTYWCEVC EEKVNPKDRF
YMCDDYCCVT LHIRCLIGKD LYMKPGALCF SNDGKELRVL PNNHMSRPFC PGCRKRCPYK
IFMVYTRLIF CSISCIRDF
//
