GenomeNet

Database: UniProt
Entry: Q9S0L2
LinkDB: Q9S0L2
Original site: Q9S0L2 
ID   RP54_SHEVD              Reviewed;         492 AA.
AC   Q9S0L2; D4ZF05;
DT   13-AUG-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   19-FEB-2014, entry version 60.
DE   RecName: Full=RNA polymerase sigma-54 factor;
GN   Name=rpoN; OrderedLocusNames=SVI_0414;
OS   Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 /
OS   DSS12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Shewanellaceae; Shewanella.
OX   NCBI_TaxID=637905;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX   PubMed=10760597; DOI=10.1016/S0167-4781(00)00035-X;
RA   Ikegami A., Nakasone K., Fujita M., Fujii S., Kato C., Usami R.,
RA   Horikoshi K.;
RT   "Cloning and characterization of the gene encoding RNA polymerase
RT   sigma factor 54 of deep-sea piezophilic Shewanella violacea.";
RL   Biochim. Biophys. Acta 1491:315-320(2000).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JCM 10179 / CIP 106290 / LMG 19151 / DSS12;
RX   PubMed=20458400; DOI=10.1039/c000396d;
RA   Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E.,
RA   Toyonaga H., Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M.,
RA   Kato C., Oshima T., Nakasone K., Mori H.;
RT   "Complete genome sequence and comparative analysis of Shewanella
RT   violacea, a psychrophilic and piezophilic bacterium from deep sea
RT   floor sediments.";
RL   Mol. Biosyst. 6:1216-1226(2010).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released. This sigma factor recognizes a DNA element,
CC       designated as region A upstream of the pressure-regulated operon.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution-NoDerivs License
CC   -----------------------------------------------------------------------
DR   EMBL; AB033988; BAA85885.1; -; Genomic_DNA.
DR   EMBL; AP011177; BAJ00385.1; -; Genomic_DNA.
DR   RefSeq; YP_003555163.1; NC_014012.1.
DR   ProteinModelPortal; Q9S0L2; -.
DR   EnsemblBacteria; BAJ00385; BAJ00385; SVI_0414.
DR   GeneID; 8969382; -.
DR   KEGG; svo:SVI_0414; -.
DR   PATRIC; 35457035; VBISheVio92117_0407.
DR   HOGENOM; HOG000071905; -.
DR   KO; K03092; -.
DR   OMA; TQKFMHT; -.
DR   ProtClustDB; PRK05932; -.
DR   BioCyc; SVIO637905:GCRO-423-MONOMER; -.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   TIGRFAMs; TIGR02395; rpoN_sigma; 1.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; DNA-directed RNA polymerase;
KW   Nucleotidyltransferase; Sigma factor; Transcription;
KW   Transcription regulation; Transferase.
FT   CHAIN         1    492       RNA polymerase sigma-54 factor.
FT                                /FTId=PRO_0000205543.
FT   DNA_BIND    382    401       H-T-H motif (By similarity).
FT   MOTIF       470    478       RPON box.
FT   COMPBIAS      6     39       Gln-rich.
SQ   SEQUENCE   492 AA;  55360 MW;  8B95B22C706DF7F7 CRC64;
     MKASLQLKMG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELD EEQVDPPVNG
     EDKTVDTEDF SATAESDGPI DNSAVETSEA ITRDSMPEEL PMDTTWDEVY TASPNSTSGA
     MRDDDMPFQG ETSEGLYEHL EWQKNLTPFS DNDLAIATAI IEAIDERGYL TQSIEDILEA
     MGDPEIEQDE IEAVLKRIQH FDPIGIAARD LSECLLIQLA QYADTTPHID NARILIRDHL
     DLIAGRDFRL LMRKTKLKED ALRDAIELIQ TLNPRPGLAV TPGKDEYVIP DVTVTKKKGR
     WMVELNPDNM PKISVNQHYA SMAKSTKSQA DSQFIRGHLQ EAKWFIKSLE SRNETLLKVS
     KCIVKFQQGF FEFGEEAMKP MVLNDIAEAV EMHESTISRV TTQKYMHTPR GIFELKYFFS
     SHVATDDGGE CSSTAIRAFI KKLVAAENQQ KPLSDSKMAL LLADQGIKVA RRTIAKYREA
     MLIPPSNQRK SL
//
DBGET integrated database retrieval system