ID Q9SSW6_ORYSJ Unreviewed; 1032 AA.
AC Q9SSW6;
DT 01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT 01-MAY-2000, sequence version 1.
DT 27-MAR-2024, entry version 83.
DE SubName: Full=GAG-POL {ECO:0000313|EMBL:BAA84458.1};
GN Name=orf2 {ECO:0000313|EMBL:BAA84458.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:BAA84458.1};
RN [1] {ECO:0000313|EMBL:BAA84458.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Shoot {ECO:0000313|EMBL:BAA84458.1};
RX PubMed=10586517; DOI=10.1266/ggs.74.83;
RA Ohtsubo H., Kumekawa N., Ohtsubo E.;
RT "RIRE2, a novel gypsy-type retrotransposon from rice.";
RL Genes Genet. Syst. 74:83-91(1999).
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DR EMBL; AB030283; BAA84458.1; -; Genomic_DNA.
DR AlphaFoldDB; Q9SSW6; -.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR CDD; cd09279; RNase_HI_like; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 2.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR37984:SF7; INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 2.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50879; RNASE_H_1; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723}.
FT DOMAIN 454..583
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|PROSITE:PS50879"
FT DOMAIN 740..906
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
SQ SEQUENCE 1032 AA; 117805 MW; 8D01F4CEABEC9E3C CRC64;
MPGIPREVIE HSLHVKEDAK PIKQRLRRFA QDRKDAIKEE LTKLLAAGFI KEVLHPDWLA
NPVLVRKKTG QWRMCVDYTD LNKSCPKDPF GLPRIDQVVD STAGCELLSF LDCYSGYHQI
RLKESDCLKT SFITPFGAYC YVTMPFGLKN AGATYQRMIQ RCFSTQIGRN VEAYVDDVVV
KTKQKDDLIS DLEETFASIR AFRMKLNPEK CTFGVPSGKL LGFMVSHRGI QANPEKVTAI
LNMKPPSTQK DVQKLTGCMA ALSRFVSRLG ERGMPFFKLL KKTDNFQWGP EAQKAFEDFK
KLLTEPPVLA SPHPQEPLLL YVSATSQVVS TVLVVEREEE GHVQKVQRPI YFVSEVLADS
KTRYPQVQKL LYGILITTRK LSHYFQGHSV TVVTSFPLGD ILHNREANGR IAKWALELMS
LDISFKPRIS IKSQALADFV AEWTECQEDT PAEKMEHWTM HFDGSKRLSG TGAGVVLISP
TGERLSYVLW IHFSTSHNVA EYEALLHGLR IAISLGIKRL IVRGDSQLVV NQVMKEWSCL
DDNMMAYRQE VRKLEDKFDG LELSHVLRHN NEAADRLANF GSKREAAPSD VFVEHLYTPT
VPHKDTTQVA DTHDIAMVEA DWREPLIRFL TSQELPRDKD EAERISRRSK LYVMHEAELY
KKSPSGILQR CVSLEEGRQL LKDIHSGICG NHAAARTIVG KAYRQGFFWP TAVSDADKIV
RTCEGCQFFA RQIHLPAQEL QTIPLSWPFA VWGLDMVGPF KKAVGGYTHL FVAIDKFSKW
IEAKPVVTIT ADNARDFFIN IVHRFGVPNR IITDNGTQFT GGVFKDFCED FGIKICYASV
AHPMSNGQVE RANGMILQGI KARVFDRLKP YAGKWVQQLP SVLWSLRTTP SRATGQSPFF
LVYGAEAMLP SEVEFESLRF RNFREERYEE DRVDDLHRLE EVREAALIRS ARYLQGLRRY
HNRNVRSRAF LVGDLVLRKI QTTRDRHKLS PLWEGPFIIS EVTRPGSYRL KREDGTLVDN
SWNIEHLRRF YA
//
