ID Q9VJ86_DROME Unreviewed; 1412 AA.
AC Q9VJ86;
DT 01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2002, sequence version 2.
DT 24-JAN-2024, entry version 168.
DE SubName: Full=Bicoid stability factor {ECO:0000313|EMBL:AAF53668.2};
DE SubName: Full=FI21091p1 {ECO:0000313|EMBL:AGL96299.1};
GN Name=bsf {ECO:0000313|EMBL:AAF53668.2,
GN ECO:0000313|FlyBase:FBgn0284256};
GN Synonyms=BSF {ECO:0000313|EMBL:AAF53668.2}, bsf-RA
GN {ECO:0000313|EMBL:AGL96299.1}, Dmel\CG10302
GN {ECO:0000313|EMBL:AAF53668.2}, DmLRPPRC1
GN {ECO:0000313|EMBL:AAF53668.2}, DmLrpprc1
GN {ECO:0000313|EMBL:AAF53668.2}, dmlrpprc1
GN {ECO:0000313|EMBL:AAF53668.2}, l(2)SH1181
GN {ECO:0000313|EMBL:AAF53668.2}, l(2)SH2 1181
GN {ECO:0000313|EMBL:AAF53668.2};
GN ORFNames=CG10302 {ECO:0000313|EMBL:AAF53668.2,
GN ECO:0000313|FlyBase:FBgn0284256}, Dmel_CG10302
GN {ECO:0000313|EMBL:AAF53668.2};
OS Drosophila melanogaster (Fruit fly).
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC Drosophilidae; Drosophila; Sophophora.
OX NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803};
RN [1] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=10731132; DOI=10.1126/science.287.5461.2185;
RA Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A.,
RA An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F.,
RA Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
RA Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E.,
RA Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C.,
RA Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A.,
RA Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C.,
RA Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G.,
RA Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.,
RA Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
RT "The genome sequence of Drosophila melanogaster.";
RL Science 287:2185-2195(2000).
RN [2] {ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=12537568;
RA Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
RA Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
RA George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
RA Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
RA Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
RA Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
RT "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster
RT euchromatic genome sequence.";
RL Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
RN [3] {ECO:0000313|Proteomes:UP000000803}
RP GENOME REANNOTATION.
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
RA Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
RA Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
RA Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M.,
RA Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT review.";
RL Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
RN [4] {ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=12537573;
RA Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
RA Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M.,
RA Celniker S.E.;
RT "The transposable elements of the Drosophila melanogaster euchromatin: a
RT genomics perspective.";
RL Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
RN [5] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=12537574;
RA Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
RA Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
RA Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
RA Karpen G.H.;
RT "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.";
RL Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
RN [6] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
RA Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
RA Ashburner M., Anxolabehere D.;
RT "Combined evidence annotation of transposable elements in genome
RT sequences.";
RL PLoS Comput. Biol. 1:166-175(2005).
RN [7] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RA Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
RA Svirskas R., Rubin G.;
RL Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
RN [8] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=17569856; DOI=10.1126/science.1139815;
RA Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT "The Release 5.1 annotation of Drosophila melanogaster heterochromatin.";
RL Science 316:1586-1591(2007).
RN [9] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX PubMed=17569867; DOI=10.1126/science.1139816;
RA Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
RA Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
RA Dimitri P., Karpen G.H., Celniker S.E.;
RT "Sequence finishing and mapping of Drosophila melanogaster
RT heterochromatin.";
RL Science 316:1625-1628(2007).
RN [10] {ECO:0000313|EMBL:AGL96299.1}
RP NUCLEOTIDE SEQUENCE.
RA Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.;
RL Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases.
RN [11] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=26109357; DOI=.1534/g3.115.018929;
RG FlyBase Consortium;
RA Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E.,
RA Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M.,
RA Gelbart W.M., null;
RT "Gene Model Annotations for Drosophila melanogaster: Impact of High-
RT Throughput Data.";
RL G3 (Bethesda) 5:1721-1736(2015).
RN [12] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=26109356; DOI=.1534/g3.115.018937;
RG FlyBase Consortium;
RA Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E.,
RA Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.,
RA null;
RT "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.";
RL G3 (Bethesda) 5:1737-1749(2015).
RN [13] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=25589440;
RA Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E.,
RA Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M.,
RA Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M.,
RA de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M.,
RA Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M.,
RA Karpen G.H., Celniker S.E.;
RT "The Release 6 reference sequence of the Drosophila melanogaster genome.";
RL Genome Res. 25:445-458(2015).
RN [14] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RG Berkeley Drosophila Genome Project;
RA Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
RA Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C.,
RA Rubin G.;
RT "Drosophila melanogaster release 4 sequence.";
RL Submitted (NOV-2022) to the EMBL/GenBank/DDBJ databases.
RN [15] {ECO:0000313|EMBL:AAF53668.2}
RP NUCLEOTIDE SEQUENCE.
RG FlyBase;
RL Submitted (NOV-2022) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AE014134; AAF53668.2; -; Genomic_DNA.
DR EMBL; BT150103; AGL96299.1; -; mRNA.
DR RefSeq; NP_523596.2; NM_078872.5.
DR AlphaFoldDB; Q9VJ86; -.
DR SMR; Q9VJ86; -.
DR IntAct; Q9VJ86; 7.
DR STRING; 7227.FBpp0080637; -.
DR PaxDb; 7227-FBpp0080637; -.
DR DNASU; 35100; -.
DR EnsemblMetazoa; FBtr0081087; FBpp0080637; FBgn0284256.
DR GeneID; 35100; -.
DR KEGG; dme:Dmel_CG10302; -.
DR UCSC; CG10302-RA; d. melanogaster.
DR AGR; FB:FBgn0284256; -.
DR CTD; 35100; -.
DR FlyBase; FBgn0284256; bsf.
DR VEuPathDB; VectorBase:FBgn0284256; -.
DR eggNOG; KOG4318; Eukaryota.
DR GeneTree; ENSGT00960000186682; -.
DR HOGENOM; CLU_006166_0_0_1; -.
DR InParanoid; Q9VJ86; -.
DR OMA; HIDRNKI; -.
DR OrthoDB; 5479341at2759; -.
DR Reactome; R-DME-5628897; TP53 Regulates Metabolic Genes.
DR Reactome; R-DME-611105; Respiratory electron transport.
DR Reactome; R-DME-9707564; Cytoprotection by HMOX1.
DR GenomeRNAi; 35100; -.
DR Proteomes; UP000000803; Chromosome 2L.
DR Bgee; FBgn0284256; Expressed in adult Malpighian tubule (Drosophila) and 29 other cell types or tissues.
DR ExpressionAtlas; Q9VJ86; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
DR GO; GO:0031673; C:H zone; IDA:FlyBase.
DR GO; GO:0005739; C:mitochondrion; IDA:FlyBase.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0030018; C:Z disc; IDA:FlyBase.
DR GO; GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.
DR GO; GO:0097222; P:mitochondrial mRNA polyadenylation; IMP:FlyBase.
DR GO; GO:0070130; P:negative regulation of mitochondrial translation; IMP:FlyBase.
DR GO; GO:0031426; P:polycistronic mRNA processing; IMP:FlyBase.
DR GO; GO:1903862; P:positive regulation of oxidative phosphorylation; IMP:FlyBase.
DR GO; GO:0062125; P:regulation of mitochondrial gene expression; IMP:FlyBase.
DR GO; GO:0044528; P:regulation of mitochondrial mRNA stability; IMP:FlyBase.
DR GO; GO:1903108; P:regulation of mitochondrial transcription; IMP:FlyBase.
DR GO; GO:0070129; P:regulation of mitochondrial translation; IMP:FlyBase.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR033490; LRP130.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR46669; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR PANTHER; PTHR46669:SF1; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 2.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:Q9VJ86};
KW Reference proteome {ECO:0000313|Proteomes:UP000000803}.
FT REPEAT 174..208
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 209..243
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 1018..1072
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1367..1412
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1043..1062
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1367..1382
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1383..1398
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1412 AA; 157264 MW; 769C785D5BF31226 CRC64;
MASILRTGKL LRYFAGFTRN VLVNSVRENE TSNLLNNAPC MCGQFQNGFA TNAAAKAELS
LDKQIRRLDQ DVRRIGRISR RDLEEVLDEI RSHRTATSSQ SLLVIRCCGN LVPEELPEVR
TALVQEIWKT LNALNVPMDI SHYNALLRVY LENEHGFAPT DFLAEIEAKG IEPNRVTYQR
LIARYCQQGD IEGATRILEF MRAKSLPVNE NVFNSLILGH SQANDLESAK GILGVMMQAG
LEPSADTYTT LLCAFARHGD LAAVKETLAE CEQKEIILLD KDLLDIVYTL TVNGNGEHVD
DVLTKLRLSP GFNQDAVNVI LRLVNKGHED VGLKLLRVMP RSSRVNGEPV DVGAFFIRQM
VKANRPVEKI LSICKSLQSE GLNPKALTIA TEAGLTNGVI NNALPLLQEM KNAGLPIRQH
YFWPLICSAE SNQVLEIVRR MQQEFSVFPN SETVRDYVIP NLKEKNWERI VTSLRDAGVP
NSTAVTSAVY SALVTHQIAE AAKIMEKNRA YYVPFLFKQP LILALSHTND YASFIRCVRQ
IHEGLQFRQG KDEEVEQVEG VAAVPTERIT PDVVGAIVQE ATTYFRRDRG ATLEKILKGL
VKQGLSISSD KATQLSEQLG SELTPKISEL LGKLSSGELE PVPLPNSGKR SLDSLSINEL
ERFIVNVEGK GENANNIKRQ LLNACFRSQN LEKTLQVIEK LEAEKFQIPV GIYAQLIDLN
THHKKSSEAL EIYGKLKAKD ATFQLDNLKA VRLADLLLQE ERVDAAFKIL EENKKEVPVA
EAEGSYNYMS TVWRILNSLA EAGQPERLRK LFDVLVGANY IVPTNVLLGP LIKVHLVKDD
IPKAIEAFEE ICQKYKSTPW KNELACRLIQ KEDAANLQKL TDLSTGIHGE VNSLYDLVFS
FVECGRVRQA RKILETPGLR TRPQRINSAC DRYKNEGLLQ PLEGLIEATK DLGHIDRNKI
YYTLLLSYDK ADEAEKALGL WTKMQEENVT PNDAFLLKLA EILSKKNIDV PFVVPETQNE
QAKAKKSKAK DATTTEAATE TAKVAEQPKE KAAKKEPAKT ETAKPPKTAS HLSGFRKAIQ
ANDPDAAISH KQSVLSGEKI GALDTSRLIE LLVRADRLTE ATKYVEELLG DKLHPQPKIF
KFYLNKIAAA GDLETMQRIG QQLNDEQKRL ISFDNRFCHA NIVAGKAEEF LKHLTTEIDA
AKTPEESTKL AEKFPRGGAV GILEKHPELV PQYQSLAEKF AAHNQLGPMN VLWMHLISTG
QEAASKEIWD KHLSNAPRLM FQRVLQTARE QQDEKLASTV ISQLKNSKIS EGAIGNAYSC
LIDIQTTKGN SDKAMVVLAN AIKDVSLENI NRTALLRLKQ AVEEKSQKFP YTIPEKRTKA
DDSSSSSSSS SSDDDVSPSV PETVPPKPDS KA
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