GenomeNet

Database: UniProt
Entry: Q9VJ86_DROME
LinkDB: Q9VJ86_DROME
Original site: Q9VJ86_DROME 
ID   Q9VJ86_DROME            Unreviewed;      1412 AA.
AC   Q9VJ86;
DT   01-MAY-2000, integrated into UniProtKB/TrEMBL.
DT   01-OCT-2002, sequence version 2.
DT   24-JAN-2024, entry version 168.
DE   SubName: Full=Bicoid stability factor {ECO:0000313|EMBL:AAF53668.2};
DE   SubName: Full=FI21091p1 {ECO:0000313|EMBL:AGL96299.1};
GN   Name=bsf {ECO:0000313|EMBL:AAF53668.2,
GN   ECO:0000313|FlyBase:FBgn0284256};
GN   Synonyms=BSF {ECO:0000313|EMBL:AAF53668.2}, bsf-RA
GN   {ECO:0000313|EMBL:AGL96299.1}, Dmel\CG10302
GN   {ECO:0000313|EMBL:AAF53668.2}, DmLRPPRC1
GN   {ECO:0000313|EMBL:AAF53668.2}, DmLrpprc1
GN   {ECO:0000313|EMBL:AAF53668.2}, dmlrpprc1
GN   {ECO:0000313|EMBL:AAF53668.2}, l(2)SH1181
GN   {ECO:0000313|EMBL:AAF53668.2}, l(2)SH2 1181
GN   {ECO:0000313|EMBL:AAF53668.2};
GN   ORFNames=CG10302 {ECO:0000313|EMBL:AAF53668.2,
GN   ECO:0000313|FlyBase:FBgn0284256}, Dmel_CG10302
GN   {ECO:0000313|EMBL:AAF53668.2};
OS   Drosophila melanogaster (Fruit fly).
OC   Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC   Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
OX   NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803};
RN   [1] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=10731132; DOI=10.1126/science.287.5461.2185;
RA   Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
RA   Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
RA   George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
RA   Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X., Brandon R.C.,
RA   Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C.,
RA   Baxter E.G., Helt G., Nelson C.R., Gabor G.L., Abril J.F., Agbayani A.,
RA   An H.J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A.,
RA   Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V.,
RA   Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J.,
RA   Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E.,
RA   Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B.,
RA   Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I.,
RA   Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C.,
RA   Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S.,
RA   Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M.,
RA   Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
RA   Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J., Hostin D.,
RA   Houston K.A., Howland T.J., Wei M.H., Ibegwam C., Jalali M., Kalush F.,
RA   Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D.,
RA   Kraft C., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A.,
RA   Li J., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C.,
RA   McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C.,
RA   Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L.,
RA   Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R.,
RA   Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V.,
RA   Reese M.G., Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
RA   Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T., Spier E.,
RA   Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C.,
RA   Turner R., Venter E., Wang A.H., Wang X., Wang Z.Y., Wassarman D.A.,
RA   Weinstock G.M., Weissenbach J., Williams S.M., WoodageT, Worley K.C.,
RA   Wu D., Yang S., Yao Q.A., Ye J., Yeh R.F., Zaveri J.S., Zhan M., Zhang G.,
RA   Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.,
RA   Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
RT   "The genome sequence of Drosophila melanogaster.";
RL   Science 287:2185-2195(2000).
RN   [2] {ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=12537568;
RA   Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
RA   Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
RA   George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
RA   Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
RA   Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
RA   Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
RT   "Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster
RT   euchromatic genome sequence.";
RL   Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
RN   [3] {ECO:0000313|Proteomes:UP000000803}
RP   GENOME REANNOTATION.
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
RA   Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
RA   Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
RA   Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
RA   Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
RA   Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M.,
RA   Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.;
RT   "Annotation of the Drosophila melanogaster euchromatic genome: a systematic
RT   review.";
RL   Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
RN   [4] {ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=12537573;
RA   Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
RA   Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M., Ashburner M.,
RA   Celniker S.E.;
RT   "The transposable elements of the Drosophila melanogaster euchromatin: a
RT   genomics perspective.";
RL   Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
RN   [5] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=12537574;
RA   Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
RA   Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
RA   Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
RA   Karpen G.H.;
RT   "Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.";
RL   Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
RN   [6] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
RA   Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
RA   Ashburner M., Anxolabehere D.;
RT   "Combined evidence annotation of transposable elements in genome
RT   sequences.";
RL   PLoS Comput. Biol. 1:166-175(2005).
RN   [7] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RA   Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
RA   Svirskas R., Rubin G.;
RL   Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
RN   [8] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=17569856; DOI=10.1126/science.1139815;
RA   Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
RT   "The Release 5.1 annotation of Drosophila melanogaster heterochromatin.";
RL   Science 316:1586-1591(2007).
RN   [9] {ECO:0000313|EMBL:AAF53668.2, ECO:0000313|Proteomes:UP000000803}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
RX   PubMed=17569867; DOI=10.1126/science.1139816;
RA   Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
RA   Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
RA   Dimitri P., Karpen G.H., Celniker S.E.;
RT   "Sequence finishing and mapping of Drosophila melanogaster
RT   heterochromatin.";
RL   Science 316:1625-1628(2007).
RN   [10] {ECO:0000313|EMBL:AGL96299.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Carlson J., Booth B., Frise E., Park S., Wan K., Yu C., Celniker S.;
RL   Submitted (MAY-2013) to the EMBL/GenBank/DDBJ databases.
RN   [11] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=26109357; DOI=.1534/g3.115.018929;
RG   FlyBase Consortium;
RA   Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B., St Pierre S.E.,
RA   Gramates L.S., Zhou P., Schroeder A.J., Falls K., Strelets V., Russo S.M.,
RA   Gelbart W.M., null;
RT   "Gene Model Annotations for Drosophila melanogaster: Impact of High-
RT   Throughput Data.";
RL   G3 (Bethesda) 5:1721-1736(2015).
RN   [12] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=26109356; DOI=.1534/g3.115.018937;
RG   FlyBase Consortium;
RA   Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B., St Pierre S.E.,
RA   Zhou P., Schroeder A.J., Falls K., Emmert D.B., Russo S.M., Gelbart W.M.,
RA   null;
RT   "Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.";
RL   G3 (Bethesda) 5:1737-1749(2015).
RN   [13] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=25589440;
RA   Hoskins R.A., Carlson J.W., Wan K.H., Park S., Mendez I., Galle S.E.,
RA   Booth B.W., Pfeiffer B.D., George R.A., Svirskas R., Krzywinski M.,
RA   Schein J., Accardo M.C., Damia E., Messina G., Mendez-Lago M.,
RA   de Pablos B., Demakova O.V., Andreyeva E.N., Boldyreva L.V., Marra M.,
RA   Carvalho A.B., Dimitri P., Villasante A., Zhimulev I.F., Rubin G.M.,
RA   Karpen G.H., Celniker S.E.;
RT   "The Release 6 reference sequence of the Drosophila melanogaster genome.";
RL   Genome Res. 25:445-458(2015).
RN   [14] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RG   Berkeley Drosophila Genome Project;
RA   Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
RA   Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E., Yu C.,
RA   Rubin G.;
RT   "Drosophila melanogaster release 4 sequence.";
RL   Submitted (NOV-2022) to the EMBL/GenBank/DDBJ databases.
RN   [15] {ECO:0000313|EMBL:AAF53668.2}
RP   NUCLEOTIDE SEQUENCE.
RG   FlyBase;
RL   Submitted (NOV-2022) to the EMBL/GenBank/DDBJ databases.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AE014134; AAF53668.2; -; Genomic_DNA.
DR   EMBL; BT150103; AGL96299.1; -; mRNA.
DR   RefSeq; NP_523596.2; NM_078872.5.
DR   AlphaFoldDB; Q9VJ86; -.
DR   SMR; Q9VJ86; -.
DR   IntAct; Q9VJ86; 7.
DR   STRING; 7227.FBpp0080637; -.
DR   PaxDb; 7227-FBpp0080637; -.
DR   DNASU; 35100; -.
DR   EnsemblMetazoa; FBtr0081087; FBpp0080637; FBgn0284256.
DR   GeneID; 35100; -.
DR   KEGG; dme:Dmel_CG10302; -.
DR   UCSC; CG10302-RA; d. melanogaster.
DR   AGR; FB:FBgn0284256; -.
DR   CTD; 35100; -.
DR   FlyBase; FBgn0284256; bsf.
DR   VEuPathDB; VectorBase:FBgn0284256; -.
DR   eggNOG; KOG4318; Eukaryota.
DR   GeneTree; ENSGT00960000186682; -.
DR   HOGENOM; CLU_006166_0_0_1; -.
DR   InParanoid; Q9VJ86; -.
DR   OMA; HIDRNKI; -.
DR   OrthoDB; 5479341at2759; -.
DR   Reactome; R-DME-5628897; TP53 Regulates Metabolic Genes.
DR   Reactome; R-DME-611105; Respiratory electron transport.
DR   Reactome; R-DME-9707564; Cytoprotection by HMOX1.
DR   GenomeRNAi; 35100; -.
DR   Proteomes; UP000000803; Chromosome 2L.
DR   Bgee; FBgn0284256; Expressed in adult Malpighian tubule (Drosophila) and 29 other cell types or tissues.
DR   ExpressionAtlas; Q9VJ86; baseline and differential.
DR   GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
DR   GO; GO:0031673; C:H zone; IDA:FlyBase.
DR   GO; GO:0005739; C:mitochondrion; IDA:FlyBase.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0030018; C:Z disc; IDA:FlyBase.
DR   GO; GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.
DR   GO; GO:0097222; P:mitochondrial mRNA polyadenylation; IMP:FlyBase.
DR   GO; GO:0070130; P:negative regulation of mitochondrial translation; IMP:FlyBase.
DR   GO; GO:0031426; P:polycistronic mRNA processing; IMP:FlyBase.
DR   GO; GO:1903862; P:positive regulation of oxidative phosphorylation; IMP:FlyBase.
DR   GO; GO:0062125; P:regulation of mitochondrial gene expression; IMP:FlyBase.
DR   GO; GO:0044528; P:regulation of mitochondrial mRNA stability; IMP:FlyBase.
DR   GO; GO:1903108; P:regulation of mitochondrial transcription; IMP:FlyBase.
DR   GO; GO:0070129; P:regulation of mitochondrial translation; IMP:FlyBase.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR   InterPro; IPR033490; LRP130.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR46669; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR46669:SF1; LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL; 1.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13812; PPR_3; 1.
DR   PROSITE; PS51375; PPR; 2.
PE   1: Evidence at protein level;
KW   Proteomics identification {ECO:0007829|PeptideAtlas:Q9VJ86};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000803}.
FT   REPEAT          174..208
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          209..243
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          1018..1072
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1367..1412
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1043..1062
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1367..1382
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1383..1398
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1412 AA;  157264 MW;  769C785D5BF31226 CRC64;
     MASILRTGKL LRYFAGFTRN VLVNSVRENE TSNLLNNAPC MCGQFQNGFA TNAAAKAELS
     LDKQIRRLDQ DVRRIGRISR RDLEEVLDEI RSHRTATSSQ SLLVIRCCGN LVPEELPEVR
     TALVQEIWKT LNALNVPMDI SHYNALLRVY LENEHGFAPT DFLAEIEAKG IEPNRVTYQR
     LIARYCQQGD IEGATRILEF MRAKSLPVNE NVFNSLILGH SQANDLESAK GILGVMMQAG
     LEPSADTYTT LLCAFARHGD LAAVKETLAE CEQKEIILLD KDLLDIVYTL TVNGNGEHVD
     DVLTKLRLSP GFNQDAVNVI LRLVNKGHED VGLKLLRVMP RSSRVNGEPV DVGAFFIRQM
     VKANRPVEKI LSICKSLQSE GLNPKALTIA TEAGLTNGVI NNALPLLQEM KNAGLPIRQH
     YFWPLICSAE SNQVLEIVRR MQQEFSVFPN SETVRDYVIP NLKEKNWERI VTSLRDAGVP
     NSTAVTSAVY SALVTHQIAE AAKIMEKNRA YYVPFLFKQP LILALSHTND YASFIRCVRQ
     IHEGLQFRQG KDEEVEQVEG VAAVPTERIT PDVVGAIVQE ATTYFRRDRG ATLEKILKGL
     VKQGLSISSD KATQLSEQLG SELTPKISEL LGKLSSGELE PVPLPNSGKR SLDSLSINEL
     ERFIVNVEGK GENANNIKRQ LLNACFRSQN LEKTLQVIEK LEAEKFQIPV GIYAQLIDLN
     THHKKSSEAL EIYGKLKAKD ATFQLDNLKA VRLADLLLQE ERVDAAFKIL EENKKEVPVA
     EAEGSYNYMS TVWRILNSLA EAGQPERLRK LFDVLVGANY IVPTNVLLGP LIKVHLVKDD
     IPKAIEAFEE ICQKYKSTPW KNELACRLIQ KEDAANLQKL TDLSTGIHGE VNSLYDLVFS
     FVECGRVRQA RKILETPGLR TRPQRINSAC DRYKNEGLLQ PLEGLIEATK DLGHIDRNKI
     YYTLLLSYDK ADEAEKALGL WTKMQEENVT PNDAFLLKLA EILSKKNIDV PFVVPETQNE
     QAKAKKSKAK DATTTEAATE TAKVAEQPKE KAAKKEPAKT ETAKPPKTAS HLSGFRKAIQ
     ANDPDAAISH KQSVLSGEKI GALDTSRLIE LLVRADRLTE ATKYVEELLG DKLHPQPKIF
     KFYLNKIAAA GDLETMQRIG QQLNDEQKRL ISFDNRFCHA NIVAGKAEEF LKHLTTEIDA
     AKTPEESTKL AEKFPRGGAV GILEKHPELV PQYQSLAEKF AAHNQLGPMN VLWMHLISTG
     QEAASKEIWD KHLSNAPRLM FQRVLQTARE QQDEKLASTV ISQLKNSKIS EGAIGNAYSC
     LIDIQTTKGN SDKAMVVLAN AIKDVSLENI NRTALLRLKQ AVEEKSQKFP YTIPEKRTKA
     DDSSSSSSSS SSDDDVSPSV PETVPPKPDS KA
//
DBGET integrated database retrieval system