GenomeNet

Database: UniProt
Entry: R0FCP9_9BRAS
LinkDB: R0FCP9_9BRAS
Original site: R0FCP9_9BRAS 
ID   R0FCP9_9BRAS            Unreviewed;      1018 AA.
AC   R0FCP9;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   24-JAN-2024, entry version 42.
DE   RecName: Full=PRP1 splicing factor N-terminal domain-containing protein {ECO:0000259|Pfam:PF06424};
GN   ORFNames=CARUB_v10000126mg {ECO:0000313|EMBL:EOA19877.1};
OS   Capsella rubella.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX   NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA19877.1, ECO:0000313|Proteomes:UP000029121};
RN   [1] {ECO:0000313|Proteomes:UP000029121}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX   PubMed=23749190; DOI=10.1038/ng.2669;
RA   Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA   Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA   Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA   Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA   Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA   Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT   "The Capsella rubella genome and the genomic consequences of rapid mating
RT   system evolution.";
RL   Nat. Genet. 45:831-835(2013).
RN   [2] {ECO:0000313|EMBL:EOA19877.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Schmutz J., Prochnik S., Nordborg M., Weigel D., Rokhsar D., Wright S.;
RT   "Genome sequencing of Capsella rubella.";
RL   Nat. Genet. 0:0-0(2013).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; KB870810; EOA19876.1; -; Genomic_DNA.
DR   EMBL; KB870810; EOA19877.1; -; Genomic_DNA.
DR   EMBL; KB870810; EOA19878.1; -; Genomic_DNA.
DR   RefSeq; XP_006286978.1; XM_006286916.1.
DR   RefSeq; XP_006286979.1; XM_006286917.1.
DR   RefSeq; XP_006286980.1; XM_006286918.1.
DR   AlphaFoldDB; R0FCP9; -.
DR   STRING; 81985.R0FCP9; -.
DR   GeneID; 17882594; -.
DR   KEGG; crb:17882594; -.
DR   eggNOG; KOG0495; Eukaryota.
DR   OrthoDB; 655233at2759; -.
DR   Proteomes; UP000029121; Unassembled WGS sequence.
DR   GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR003107; HAT.
DR   InterPro; IPR010491; PRP1_N.
DR   InterPro; IPR045075; Syf1-like.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   InterPro; IPR019734; TPR_repeat.
DR   PANTHER; PTHR11246; PRE-MRNA SPLICING FACTOR; 1.
DR   PANTHER; PTHR11246:SF1; PRE-MRNA-PROCESSING FACTOR 6; 1.
DR   Pfam; PF06424; PRP1_N; 1.
DR   Pfam; PF13428; TPR_14; 1.
DR   Pfam; PF14559; TPR_19; 1.
DR   SMART; SM00386; HAT; 12.
DR   SMART; SM00028; TPR; 5.
DR   SUPFAM; SSF48452; TPR-like; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   DOMAIN          103..260
FT                   /note="PRP1 splicing factor N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF06424"
FT   REGION          119..175
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1018 AA;  114519 MW;  78242D85EEA6C858 CRC64;
     MVFLSIPNGK TLSFDLNPNS TTISAFEQLV HQRSDIPPPF VRYSLRIRSH SRVFLDSKDS
     DLILLSDLGV SRFSTVNIHV PLLGGMQAMA PPKPRLEFLN SKPPSNYVAG LGRGATGFTT
     RSDIGPARAA PDLPDRSVAA APGVGRGAGK PSEADDDEET EDKGYDEHQK FDEFEGNDVG
     LFSNAEYDED DKKADAIWES IDQRMDSRRK DRREAKLKEE IEKYRASNPK ITEQFADLKR
     KLHTLSADDW DSIPEIGDHS LQNKKKKFES FVPIPDTLLE KAKKEKELVL ALDPKSRAAG
     GSETPWGQTP VTDLTAVGEG RGTVLSLKLD RLSDSVSGQT VVDPKGYLTD LKSMKRTTDE
     EMLDRNRARL LYKSLTQSNP KNPNGWIAAA RVEEMDQEIK TARLLIQRGC EECPKNEDVW
     LEACRLANPE DAKAVIAKGV KLIPNSVKLW LEAAKLEHDE DNKSRVLRKG LEHIPDSVRL
     WKAVVELANE GDARVLLHRA VECCPLHLEL WVALARLETY AESKKVLNKA REKLPKEPAI
     WITAAKLEEA NRNTAMVGKI IDRGIKTLQR EGVVIDRENW MNEAEASERA GSVATCQAII
     KNTISIGVEE EDRKRTWVAD ADECKKRGSI ETARAIYAHA LTVFLTKKSI WLKAAQLEKS
     HGSRESLDAL LRKAVTYVPQ AEVLWLMGAK EKWLAGDVPA ARAILQEAYA AIPNSEEIWL
     AAFKLEFENK EPERARMLLA KARERGGTER VWMKSAIVER ELGNVEEERR LLDEGLKQFP
     TFFKLWLMLG QLEERFKHLE QARKAYGSGL KHCPHCIPLW LSLANLEEKV NGLNKARAIL
     TTARKKNPGG AELWLAAIRA ELRHDNKKEA ERLMSKALQE CPDSGILWAA DIEMAPRPRR
     KTKSVDAMKK CDNDPHVTAA VAKLSWQDKK VEKARSWFKR AVTLAPNIGD FWALYYKFEH
     QHGSEENQKE VIAKCVASEP KHGEKWQAIS KSVENAHQPI ETILKRVMLA MNKEEKAA
//
DBGET integrated database retrieval system