ID R0FCP9_9BRAS Unreviewed; 1018 AA.
AC R0FCP9;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 24-JAN-2024, entry version 42.
DE RecName: Full=PRP1 splicing factor N-terminal domain-containing protein {ECO:0000259|Pfam:PF06424};
GN ORFNames=CARUB_v10000126mg {ECO:0000313|EMBL:EOA19877.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA19877.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
RN [2] {ECO:0000313|EMBL:EOA19877.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., Prochnik S., Nordborg M., Weigel D., Rokhsar D., Wright S.;
RT "Genome sequencing of Capsella rubella.";
RL Nat. Genet. 0:0-0(2013).
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DR EMBL; KB870810; EOA19876.1; -; Genomic_DNA.
DR EMBL; KB870810; EOA19877.1; -; Genomic_DNA.
DR EMBL; KB870810; EOA19878.1; -; Genomic_DNA.
DR RefSeq; XP_006286978.1; XM_006286916.1.
DR RefSeq; XP_006286979.1; XM_006286917.1.
DR RefSeq; XP_006286980.1; XM_006286918.1.
DR AlphaFoldDB; R0FCP9; -.
DR STRING; 81985.R0FCP9; -.
DR GeneID; 17882594; -.
DR KEGG; crb:17882594; -.
DR eggNOG; KOG0495; Eukaryota.
DR OrthoDB; 655233at2759; -.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR010491; PRP1_N.
DR InterPro; IPR045075; Syf1-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR11246; PRE-MRNA SPLICING FACTOR; 1.
DR PANTHER; PTHR11246:SF1; PRE-MRNA-PROCESSING FACTOR 6; 1.
DR Pfam; PF06424; PRP1_N; 1.
DR Pfam; PF13428; TPR_14; 1.
DR Pfam; PF14559; TPR_19; 1.
DR SMART; SM00386; HAT; 12.
DR SMART; SM00028; TPR; 5.
DR SUPFAM; SSF48452; TPR-like; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 103..260
FT /note="PRP1 splicing factor N-terminal"
FT /evidence="ECO:0000259|Pfam:PF06424"
FT REGION 119..175
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1018 AA; 114519 MW; 78242D85EEA6C858 CRC64;
MVFLSIPNGK TLSFDLNPNS TTISAFEQLV HQRSDIPPPF VRYSLRIRSH SRVFLDSKDS
DLILLSDLGV SRFSTVNIHV PLLGGMQAMA PPKPRLEFLN SKPPSNYVAG LGRGATGFTT
RSDIGPARAA PDLPDRSVAA APGVGRGAGK PSEADDDEET EDKGYDEHQK FDEFEGNDVG
LFSNAEYDED DKKADAIWES IDQRMDSRRK DRREAKLKEE IEKYRASNPK ITEQFADLKR
KLHTLSADDW DSIPEIGDHS LQNKKKKFES FVPIPDTLLE KAKKEKELVL ALDPKSRAAG
GSETPWGQTP VTDLTAVGEG RGTVLSLKLD RLSDSVSGQT VVDPKGYLTD LKSMKRTTDE
EMLDRNRARL LYKSLTQSNP KNPNGWIAAA RVEEMDQEIK TARLLIQRGC EECPKNEDVW
LEACRLANPE DAKAVIAKGV KLIPNSVKLW LEAAKLEHDE DNKSRVLRKG LEHIPDSVRL
WKAVVELANE GDARVLLHRA VECCPLHLEL WVALARLETY AESKKVLNKA REKLPKEPAI
WITAAKLEEA NRNTAMVGKI IDRGIKTLQR EGVVIDRENW MNEAEASERA GSVATCQAII
KNTISIGVEE EDRKRTWVAD ADECKKRGSI ETARAIYAHA LTVFLTKKSI WLKAAQLEKS
HGSRESLDAL LRKAVTYVPQ AEVLWLMGAK EKWLAGDVPA ARAILQEAYA AIPNSEEIWL
AAFKLEFENK EPERARMLLA KARERGGTER VWMKSAIVER ELGNVEEERR LLDEGLKQFP
TFFKLWLMLG QLEERFKHLE QARKAYGSGL KHCPHCIPLW LSLANLEEKV NGLNKARAIL
TTARKKNPGG AELWLAAIRA ELRHDNKKEA ERLMSKALQE CPDSGILWAA DIEMAPRPRR
KTKSVDAMKK CDNDPHVTAA VAKLSWQDKK VEKARSWFKR AVTLAPNIGD FWALYYKFEH
QHGSEENQKE VIAKCVASEP KHGEKWQAIS KSVENAHQPI ETILKRVMLA MNKEEKAA
//