ID R0GVD9_9BRAS Unreviewed; 727 AA.
AC R0GVD9;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
DE Flags: Fragment;
GN ORFNames=CARUB_v10008432mg {ECO:0000313|EMBL:EOA39776.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA39776.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
RN [2] {ECO:0000313|EMBL:EOA39776.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., Prochnik S., Nordborg M., Weigel D., Rokhsar D., Wright S.;
RT "Genome sequencing of Capsella rubella.";
RL Nat. Genet. 0:0-0(2013).
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DR EMBL; KB870805; EOA39775.1; -; Genomic_DNA.
DR EMBL; KB870805; EOA39776.1; -; Genomic_DNA.
DR RefSeq; XP_006306877.1; XM_006306815.1.
DR RefSeq; XP_006306878.1; XM_006306816.1.
DR AlphaFoldDB; R0GVD9; -.
DR eggNOG; KOG4197; Eukaryota.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 9.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 9.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 7.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 83..117
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 146..176
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 179..209
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 210..244
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 343..377
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 405..439
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 506..540
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:EOA39776.1"
SQ SEQUENCE 727 AA; 81632 MW; CC0BF9DF290923DE CRC64;
IAQLMVMRLV SNNLLIQRHS FCRRCNCTLA LSNHEPITQN TRNFLDTTTS TAIFQCNSQI
SKLARNGNLQ GAEAIFRQMS HRSIVSWNAM ISAYAENGKM SKAWQVFDEM PVRATTSYNA
MVTAMIKNKC DLGKSYELFC SIPEKNAVSY ASMITGFVRA GMFDEAECLY AETPVKFRDP
VASNVLLSGY LRAGKWNEAV RVFQGMAVKE VVSYSSMIDG YCKMGRLADA ITLFDGMPER
NVITWTAMID GYFKAGFFED GFGLFLRMRR EGDVRVNSNT LAVMFKACRD FSRYREGSQI
HGLVSRMPLE FDLFLGNSLI SMYSKLGYMG EAKAVFGVMN NKDTVSWNSL ITGLVQREQI
SEAYELFEKM PDKDLVSWTD MIKGFSRKGE ISKCVELFRM MPEKDGVTWT AMISAFVSNG
YYEEALCWFL KMLQKEVRPN SYTFSSVLSA TASLADLIEG LQIHGRVVKM NMGNDLSVQN
SLVSMYCKCG NTNDAYKIFL CINEPNIVSY NTMISGFSYN GFGKEALKLF SILESTEKEP
NGVTFLAILS ACVHVGYVDL GWKYFKSMKF SYGIEPGPDH YACMVDLLGR SGLLDEAYNL
ISSMPCEPHS GVWGSLLAAS KTYLHVDLAE LAAKKLIELE PDSATPYVVL SQLYSVVGRN
RDCDRIMNIK KSRRIKKDPG SSWIILNGQV HNFLAGDESY LNVEEIAFTL KMIEKEMELI
CVSHGSS
//
