ID R0HBD5_9BRAS Unreviewed; 527 AA.
AC R0HBD5;
DT 26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT 26-JUN-2013, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=CARUB_v10022820mg {ECO:0000313|EMBL:EOA26734.1};
OS Capsella rubella.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA26734.1, ECO:0000313|Proteomes:UP000029121};
RN [1] {ECO:0000313|Proteomes:UP000029121}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX PubMed=23749190; DOI=10.1038/ng.2669;
RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT "The Capsella rubella genome and the genomic consequences of rapid mating
RT system evolution.";
RL Nat. Genet. 45:831-835(2013).
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DR EMBL; KB870808; EOA26734.1; -; Genomic_DNA.
DR RefSeq; XP_006293836.1; XM_006293774.1.
DR AlphaFoldDB; R0HBD5; -.
DR eggNOG; KOG0017; Eukaryota.
DR Proteomes; UP000029121; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR23002:SF117; CCHC-TYPE ZINC FINGER NUCLEIC ACID BINDING PROTEIN-RELATED; 1.
DR PANTHER; PTHR23002; ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 3.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 2.
DR PROSITE; PS50158; ZF_CCHC; 2.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00047}.
FT DOMAIN 434..447
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 470..483
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 227..283
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 309..345
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 227..250
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 527 AA; 59310 MW; C4BEA9369D513A6A CRC64;
MFEGTTSVKR TKLDMLASQF ENLRMEEKEF VAEFSAKLCD ISNESFALGK VYKDKKLVKK
LKRSLPAKFE PKICAVEEAH NLDEMAFDEF VGILKAFELS KVHDAGGIKK EDEAVKKKVD
IGVSLKASSS EDSMAMLSRE FAKYLKRKGK DMKNRRDEDV RGSSKNIQCF ECKGYGHVRS
DCANLKKHNK KAMNVASDDY ETDSEDEEEL LNLVAFTTFK DSSEIESATA SGKPANASRK
PATASGKPAT ASESAAKPAT AYESANTAKS ETESDSDAES FDDEELAEKY EMLYEHWLKV
VEENSVLTKE KLKLEAKVAE AEKYASEKEE EASQAKVQLG ETQKNLRMLN NGTKQLDEIL
NIGKMDRYGL GFKGKPSKED SVFVYGGKVT SASGTVSETA AKKESASETA VVQKIGTKNS
NLESEAQRIF RPTCYHCGVV GHIRPRCFRF LRERNQMKKA YDVSFHVPTC YHCGVRGHIK
RNCFRFIREF SHEDIRYRKI WVRKDQLYGD GALGYQPRFA KRGVFPN
//
