GenomeNet

Database: UniProt
Entry: R0HEK6_9BRAS
LinkDB: R0HEK6_9BRAS
Original site: R0HEK6_9BRAS 
ID   R0HEK6_9BRAS            Unreviewed;       912 AA.
AC   R0HEK6;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   24-JAN-2024, entry version 43.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EOA23470.1};
GN   ORFNames=CARUB_v10016662mg {ECO:0000313|EMBL:EOA23470.1};
OS   Capsella rubella.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.
OX   NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA23470.1, ECO:0000313|Proteomes:UP000029121};
RN   [1] {ECO:0000313|Proteomes:UP000029121}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121};
RX   PubMed=23749190; DOI=10.1038/ng.2669;
RA   Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L.,
RA   Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T.,
RA   Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y.,
RA   Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H.,
RA   Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J.,
RA   Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.;
RT   "The Capsella rubella genome and the genomic consequences of rapid mating
RT   system evolution.";
RL   Nat. Genet. 45:831-835(2013).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; KB870809; EOA23470.1; -; Genomic_DNA.
DR   RefSeq; XP_006290572.1; XM_006290510.1.
DR   AlphaFoldDB; R0HEK6; -.
DR   STRING; 81985.R0HEK6; -.
DR   GeneID; 17885404; -.
DR   KEGG; crb:17885404; -.
DR   eggNOG; KOG2135; Eukaryota.
DR   OrthoDB; 5406435at2759; -.
DR   Proteomes; UP000029121; Unassembled WGS sequence.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   CDD; cd12257; RRM1_RBM26_like; 1.
DR   Gene3D; 3.30.70.330; -; 2.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR045137; RBM26/27.
DR   InterPro; IPR000504; RRM_dom.
DR   InterPro; IPR000571; Znf_CCCH.
DR   PANTHER; PTHR14398; RNA RECOGNITION RRM/RNP DOMAIN; 1.
DR   PANTHER; PTHR14398:SF0; ZINC FINGER PROTEIN SWM; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   SMART; SM00360; RRM; 1.
DR   SMART; SM00356; ZnF_C3H1; 1.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR   PROSITE; PS50102; RRM; 1.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000029121};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW   ProRule:PRU00176}; Zinc {ECO:0000256|PROSITE-ProRule:PRU00723};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}.
FT   DOMAIN          200..228
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50103"
FT   DOMAIN          438..510
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   ZN_FING         200..228
FT                   /note="C3H1-type"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT   REGION          1..124
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          315..339
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          628..693
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          805..912
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          593..624
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        1..15
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        32..50
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        71..109
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        315..331
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        628..644
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        651..693
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        805..826
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        868..883
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        884..905
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   912 AA;  99667 MW;  0E9680F6329AD553 CRC64;
     MELPVSSQKQ SVLSPPECMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS LEQGSSDQGF
     SRPYRKNYRH YENGNSFSEQ DKRSFGAGSG QRVQFDNQRM RSNQMFSRDS GPGRGRGNYG
     SWAQRDSRFN PVDLSSHMVQ VGSMAPNMFG GRGLAGVSAA QGAPWPAFGM IPGVPNGGLD
     AFHHLQGSLR PPLNAPLNMG IPRQRCRDFE ERGFCLRGDM CPMEHGINRI VVDDVQSLSQ
     FNLPVSVPAA PHLAASSKPV PAQFGAASFM NPKGAHGRIN EGGLTVDNLA FGDVYPSGGG
     TDFYDPDQPL WNNSAGETSG AISTQNSHGI DENLAPLDDN NQDGTENGCG IRDSRSISQS
     VWGRMRGSNS QANSKEKVDA VLNSSAGLED QLKEVSVNIS RHGKQNYVGE SVTKVVDSSN
     TSNDAMNNTR KSTQKAMRTL FVNNVPHESN RRDLILSHFQ KFGKVIDIHI PLNTERAFVQ
     FSKREEAESA LRAPDAVMGN RFIKLWWANR DSIPDNGLST GNGASMKGRG MAASGGQNQL
     PIAAASKSNH VNSMAKGPAF HTGGVPSSEQ SKPVVATNGP KVTLLQQKKA ATLEQLKETL
     RIKQEMLDQK RNEYRKKLAT FEKQGTVVKG EEADEPDAKR VKVDTASDSG AAIASPKTES
     STDKRVPIQK PLSTCKLSTE SSSPDSKNLK QRPYSFTTSL NAPMANRYKL DNRTTTIKVV
     PPLPTGLADV AVLKEHFSSY GEVSKVELED NASIDKGKDH ETHNENRAAC VTFVKRNAAE
     KALANAKCWQ EHMLQLVWVT RQSNRESNNN NNNNNNNNSN SVSVSRDLHS SKDKCASVSN
     DPKPADEVKA SSTEEPEKTS VSGDNDSTLD KQETKESNND NNKSNHESIE GASSEVIAST
     GTDLDQSEQI RE
//
DBGET integrated database retrieval system