ID R4K5I4_CLOPA Unreviewed; 270 AA.
AC R4K5I4;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=Site-specific recombinase XerD {ECO:0000313|EMBL:AGK97833.1};
GN ORFNames=Clopa_3005 {ECO:0000313|EMBL:AGK97833.1};
OS Clostridium pasteurianum BC1.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae;
OC Clostridium.
OX NCBI_TaxID=86416 {ECO:0000313|EMBL:AGK97833.1, ECO:0000313|Proteomes:UP000013523};
RN [1] {ECO:0000313|EMBL:AGK97833.1, ECO:0000313|Proteomes:UP000013523}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BC1 {ECO:0000313|EMBL:AGK97833.1,
RC ECO:0000313|Proteomes:UP000013523};
RG US DOE Joint Genome Institute;
RA Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S.,
RA Peters L., Mikhailova N., Teshima H., Detter J.C., Han C., Tapia R.,
RA Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Dunn J.,
RA Taghavi S., Francis A., van der Lelie D., Woyke T.;
RT "Complete sequence of chromosome of Clostridium pasteurianum BC1.";
RL Submitted (JAN-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the 'phage' integrase family.
CC {ECO:0000256|ARBA:ARBA00008857}.
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DR EMBL; CP003261; AGK97833.1; -; Genomic_DNA.
DR AlphaFoldDB; R4K5I4; -.
DR STRING; 86416.Clopa_3005; -.
DR KEGG; cpas:Clopa_3005; -.
DR PATRIC; fig|86416.3.peg.2992; -.
DR eggNOG; COG4974; Bacteria.
DR HOGENOM; CLU_1029363_0_0_9; -.
DR Proteomes; UP000013523; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR044068; CB.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR InterPro; IPR004107; Integrase_SAM-like_N.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR Pfam; PF13730; HTH_36; 1.
DR Pfam; PF13495; Phage_int_SAM_4; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR PROSITE; PS51900; CB; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU01248}; Reference proteome {ECO:0000313|Proteomes:UP000013523}.
FT DOMAIN 1..87
FT /note="Core-binding (CB)"
FT /evidence="ECO:0000259|PROSITE:PS51900"
SQ SEQUENCE 270 AA; 31809 MW; 272B047FE54FD90A CRC64;
MQTKDAIREF FYELIIQNYT ERTVRGYKGN IARFNAFIEK EFEITELEEI SKPHIKKYIF
FLQQKGLTSV YINTILKNLR SLFKYRSNEG YCSNIAEKVG WLKEKKTVIQ TFTDAEVKKI
ITNFTLIDND DIISNITDGA FRTYTLIKSM CYGDKNTCYP SQKYLAKKLN KNIRTIQRYL
IELVQAKMIK IKRKGSISNV YTVMSKVTST VGNAVKKAKK AYDNHFKKKK DSADIKKTKF
NDYEQRNYNY ENLEQMLLGE MEYDVTKLLE
//
