ID R5WPQ8_9BACT Unreviewed; 313 AA.
AC R5WPQ8;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 24-JAN-2024, entry version 37.
DE RecName: Full=NusB/RsmB/TIM44 domain-containing protein {ECO:0000259|Pfam:PF01029};
GN ORFNames=BN505_00953 {ECO:0000313|EMBL:CCZ97936.1};
OS Alistipes sp. CAG:157.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae;
OC Alistipes.
OX NCBI_TaxID=1262692 {ECO:0000313|EMBL:CCZ97936.1, ECO:0000313|Proteomes:UP000018346};
RN [1] {ECO:0000313|EMBL:CCZ97936.1, ECO:0000313|Proteomes:UP000018346}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:157 {ECO:0000313|Proteomes:UP000018346};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the NusB family.
CC {ECO:0000256|ARBA:ARBA00005952}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CCZ97936.1}.
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DR EMBL; CBAZ010000010; CCZ97936.1; -; Genomic_DNA.
DR AlphaFoldDB; R5WPQ8; -.
DR Proteomes; UP000018346; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006353; P:DNA-templated transcription termination; IEA:InterPro.
DR GO; GO:0031564; P:transcription antitermination; IEA:UniProtKB-KW.
DR Gene3D; 1.10.940.10; NusB-like; 1.
DR InterPro; IPR035926; NusB-like_sf.
DR InterPro; IPR011605; NusB_fam.
DR InterPro; IPR006027; NusB_RsmB_TIM44.
DR NCBIfam; TIGR01951; nusB; 1.
DR PANTHER; PTHR11078:SF3; ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR11078; N UTILIZATION SUBSTANCE PROTEIN B-RELATED; 1.
DR Pfam; PF01029; NusB; 1.
DR SUPFAM; SSF48013; NusB-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000018346};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription antitermination {ECO:0000256|ARBA:ARBA00022814};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 198..295
FT /note="NusB/RsmB/TIM44"
FT /evidence="ECO:0000259|Pfam:PF01029"
SQ SEQUENCE 313 AA; 36433 MW; 91D6695216532132 CRC64;
MFSRRFLRIK VIKALYSHFK SGCDSMITSE KNLVGSIDKA YDLYFQMLRL VADVKVYAEE
RIELGRNKKL PTYSDLHPNL SFVENGVIAQ IEESAALNAR LEKAALGWNQ YPELIKHLYT
LMSESEYYKR YMQLPTHGYA SDRTVVEDFY IETVQNNDML ESVVEEQSIL WCDDIDFALI
MVVRTLENCR EKQDDLPIRR EYKSEDDLSF TKELFRKTVV HFDEYQEYIE KFTTNWDVER
IAFLDNIILA CAVAEIVGFD SIPVKVTLDE YIEIAKYYST PGSSLFINGV LDRIVESLRS
EGKINKTGRG LME
//
