ID R6D139_9FIRM Unreviewed; 635 AA.
AC R6D139;
DT 24-JUL-2013, integrated into UniProtKB/TrEMBL.
DT 24-JUL-2013, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA71347.1};
GN ORFNames=BN718_00597 {ECO:0000313|EMBL:CDA71347.1};
OS Ruminococcus sp. CAG:579.
OC Bacteria; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae;
OC Ruminococcus.
OX NCBI_TaxID=1262963 {ECO:0000313|EMBL:CDA71347.1, ECO:0000313|Proteomes:UP000018387};
RN [1] {ECO:0000313|EMBL:CDA71347.1, ECO:0000313|Proteomes:UP000018387}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MGS:579 {ECO:0000313|Proteomes:UP000018387};
RA Nielsen H.B., Almeida M., Juncker A.S., Rasmussen S., Li J., Sunagawa S.,
RA Plichta D., Gautier L., Le Chatelier E., Peletier E., Bonde I., Nielsen T.,
RA Manichanh C., Arumugam M., Batto J., Santos M.B.Q.D., Blom N., Borruel N.,
RA Burgdorf K.S., Boumezbeur F., Casellas F., Dore J., Guarner F., Hansen T.,
RA Hildebrand F., Kaas R.S., Kennedy S., Kristiansen K., Kultima J.R.,
RA Leonard P., Levenez F., Lund O., Moumen B., Le Paslier D., Pons N.,
RA Pedersen O., Prifti E., Qin J., Raes J., Tap J., Tims S., Ussery D.W.,
RA Yamada T., MetaHit consortium, Renault P., Sicheritz-Ponten T., Bork P.,
RA Wang J., Brunak S., Ehrlich S.D.;
RT "Dependencies among metagenomic species, viruses, plasmids and units of
RT genetic variation.";
RL Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:CDA71347.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CBCK010000008; CDA71347.1; -; Genomic_DNA.
DR AlphaFoldDB; R6D139; -.
DR STRING; 1262963.BN718_00597; -.
DR Proteomes; UP000018387; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd06267; PBP1_LacI_sugar_binding-like; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR046335; LacI/GalR-like_sensor.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR PANTHER; PTHR30146:SF152; HTH-TYPE TRANSCRIPTIONAL REGULATOR EBGR-RELATED; 1.
DR PANTHER; PTHR30146; LACI-RELATED TRANSCRIPTIONAL REPRESSOR; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF13377; Peripla_BP_3; 1.
DR SMART; SM00267; GGDEF; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
DR PROSITE; PS50887; GGDEF; 1.
PE 4: Predicted;
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000018387};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 501..635
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
SQ SEQUENCE 635 AA; 71593 MW; 76415543D4D9BF13 CRC64;
MALKKRKIIG VLLAQAEREY QSKLMSGIAE RAFELGYDCF TFSDPIKTES GENVRRGAEN
IFDLISFDML DGVIIVPDTF NNKKTAEFAE RLVRRKFKGA VVSVDHRAGD MPVIMGDDAA
AIESLTDHLI EEHGCRIIDF FSGTPGHEHS ARRLEGYLRS LKKHGIAYEP ARVHDGDFWY
NMGEKTAEDI LSSPLPRPQA VVCACDTQAI SLCDAFAHRG IKVPDDIKIT GYDSIKAGTN
HVPSITSAEI PAKQTGANAV EYLHSVIENK PFEPGAYSTD IVLAQTCGCG VDASAVYRSK
NFYYSDDNHL SNFLSASNDM MSDLISAENL NSLIGRVNWY SFQVRPFDAL YLCLNQNWEG
GENDYIARGY SKNVRLRLAR RVEGAKQEYD ISFPSADMLP EMAWQREKPA VFYFAPLYFG
DRAFGYIVMQ YDTPHSMVDN FCGWLKNVCN GFECMRRQIH IRRMYFELKK AALTDSLTGL
YNRYAFNRRA EELIADGERG VKTMFMMADL NYLKQINDNF GHLAGDKALN AIGQAISSAC
GENERCYRFG GDEFMLIGVG DYSEERIDDL KLRIRRSLED FNAHSGLPYM VKVSLGAVCE
IADSAEKLDR MVKLADEKMY QDKQINKKHS ASPFR
//